Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=CTCF_N4293-ChIP.sorted.bam -i=CTCF_N4293-Input.sorted.bam -odir=SPP-300K-CTCF_N4293-ChIP.2x75mers-trimmed.bwa-mem.hg19-female.dedup.merged -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=CTCF_N4293-ChIP.sorted.pseudoRep1.bam -i=CTCF_N4293-Input.sorted.pseudoRep1.bam -odir=SPP-300K-CTCF_N4293-ChIP.pseudoRep1.2x75mers-trimmed.bwa-mem.hg19-female.dedup.merged -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=CTCF_N4293-ChIP.sorted.pseudoRep2.bam -i=CTCF_N4293-Input.sorted.pseudoRep2.bam -odir=SPP-300K-CTCF_N4293-ChIP.pseudoRep2.2x75mers-trimmed.bwa-mem.hg19-female.dedup.merged -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=L119-CRISPRa-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -i=L110-CRISPRa-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -odir=SPP-300K-L119-CRISPRa-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=L120-CRISPRk-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -i=L111-CRISPRk-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -odir=SPP-300K-L120-CRISPRk-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup -p=8 -npeak=300000 -savr -savn -rf &
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=L130-CRISPRi-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -i=L112-CRISPRi-CTCF_N4293-Input.2x75mers-trimmed.bwa-mem.hg19-female.dedup.bam -odir=SPP-300K-L130-CRISPRi-CTCF_N4293-CTCF.2x75mers-trimmed.bwa-mem.hg19-female.dedup -p=8 -npeak=300000 -savr -savn -rf &