Index of /kundaje/marinovg/oak/various/ENCODE4/Chromatin-nanopores/2025-12-04-NextSeq-run

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]ATACTSSscore-ATAC.txt2025-12-05 13:35 255  
[ ]Bacteroides_thetaiotaomicron_VPI-5482.all.2x36mers.unique.5p.TSS_profile2025-12-08 22:09 38K 
[ ]Bacteroides_thetaiotaomicron_VPI-5482.all.2x36mers.unique.5p.bigWig2025-12-08 22:08 17M 
[ ]Bacteroides_thetaiotaomicron_VPI-5482.all.2x36mers.unique.bam2025-12-05 09:23 542M 
[ ]Bacteroides_thetaiotaomicron_VPI-5482.all.2x36mers.unique.bam.bai2025-12-05 12:21 19K 
[ ]Bacteroides_thetaiotaomicron_VPI-5482.all.2x36mers.unique.bigWig2025-12-08 22:09 26M 
[ ]K562_CTCF_profile-L4901-HEK_GFP_1_MNase.2x36mers.unique.dedup.minus2025-12-05 13:31 44K 
[ ]K562_CTCF_profile-L4901-HEK_GFP_1_MNase.2x36mers.unique.dedup.plus2025-12-05 13:31 42K 
[ ]L4930-1_aerobic_lysozyme_95.2x36mers.Bacteroides_thetaiotaomicron_VPI-5482-ASM1106v1.InsLen2025-12-05 09:18 13K 
[ ]MNase_config2025-12-05 03:52 304  
[TXT]MarkDuplicates.sh2025-12-05 08:25 359  
[TXT]PEInsertDistFromBAM-2x36mers.sh2025-12-05 08:25 270  
[ ]SAMstats-1x36mers.files2025-12-05 08:25 85  
[TXT]SAMstats-1x36mers.sh2025-12-05 08:25 307  
[ ]SAMstats-2x36mers.files2025-12-05 08:25 182  
[TXT]SAMstats-2x36mers.sh2025-12-05 08:25 626  
[ ]SAMstats-files.tar.gz2025-12-08 22:11 2.4K 
[ ]SAMstats_ATAC.files2025-12-05 12:48 920  
[ ]SAMstats_ATAC.table2025-12-05 12:48 552  
[ ]SAMstats_SMF.files2025-12-05 12:48 3.1K 
[ ]SAMstats_SMF.table2025-12-05 12:48 2.3K 
[TXT]SampleSheet.csv2025-12-04 23:33 3.0K 
[ ]TSS-profile-L4963-Bodo_saltans_SMF_2002025-12-05 12:25 97K 
[ ]TSS-profile-L4964-Bodo_saltans_SMF_502025-12-05 12:24 94K 
[ ]TSS-profile-L4965-Bodo_saltans_SMF_52025-12-05 12:24 80K 
[ ]TSS-profile-L4966-Naegleria_gruberi_SMF_2002025-12-05 12:34 97K 
[ ]TSS-profile-L4967-Naegleria_gruberi_SMF_502025-12-05 12:34 97K 
[ ]TSS-profile-L4968-Naegleria_gruberi_SMF_52025-12-05 12:33 94K 
[ ]TSS-profile-L4969-Giardia_lamblia_SMF_2002025-12-05 12:33 95K 
[ ]TSS-profile-L4970-Giardia_lamblia_SMF_502025-12-05 12:33 95K 
[ ]TSS-profile-L4971-Giardia_lamblia_SMF_52025-12-05 12:33 88K 
[ ]TSS-profile-L4972-Trichomonas_vaginalis_SMF_2002025-12-05 12:41 89K 
[ ]TSS-profile-L4973-Trichomonas_vaginalis_SMF_502025-12-05 12:48 61K 
[ ]TSS-profile-L4978-Ectocarpus_siliculosus_SMF_2002025-12-05 12:25 82K 
[ ]TSS-profile-L4984-Ectocarpus_siliculosus_SMF_200_sonicated2025-12-05 12:25 79K 
[ ]TSS-profile-L4985-Ectocarpus_siliculosus_SMF_50_sonicated2025-12-05 12:25 83K 
[ ]TSS-profile-L4988-1_aerobic_SMF_952025-12-05 12:10 28K 
[ ]TSS-profile-L4990-1_aerobic_lysozyme_SMF_952025-12-05 12:10 28K 
[ ]TSS-profile-L4994-1_anaerobic_lysozyme_SMF_952025-12-05 12:11 90K 
[ ]TSS-profile-L5003-Symbiodinium_SMF_native_3min.Smic_04-503SCI.032025-12-05 12:25 81K 
[ ]TSS-profile-L5004-Symbiodinium_SMF_native_8min.Smic_04-503SCI.032025-12-05 12:24 67K 
[ ]TSS-profile-L5005-Symbiodinium_SMF_native_15min.Smic_04-503SCI.032025-12-05 12:24 77K 
[ ]TSS-profile-L5006-Symbiodinium_SMF_native_30min.Smic_04-503SCI.032025-12-05 12:25 95K 
[ ]TSS-profile-L5007-Symbiodinium_XL-SMF_2uL.Smic_04-503SCI.032025-12-05 12:25 96K 
[ ]TSS-profile-L5008-Symbiodinium_XL-SMF_10uL.Smic_04-503SCI.032025-12-05 12:24 90K 
[ ]TSS-profile-L5009-Symbiodinium_XL-SMF_30uL.Smic_04-503SCI.032025-12-05 12:24 66K 
[ ]TSS-profile.files2025-12-05 12:56 2.1K 
[ ]TSS-profile.table2025-12-05 12:56 733K 
[ ]TSS_profile-L4901-HEK_GFP_1_MNase.2x36mers.unique.dedup.minus2025-12-05 13:32 181K 
[ ]TSS_profile-L4901-HEK_GFP_1_MNase.2x36mers.unique.dedup.plus2025-12-05 13:32 173K 
[ ]all.251204_NB551514_0387_AH2KGNBGY2.fastq.lines2025-12-05 07:57 10  
[TXT]makewiggle-stranded-2x36mers.sh2025-12-05 08:25 573  
[TXT]map-1x36mers.sh2025-12-05 08:25 658  
[TXT]map-2x36mers.sh2025-12-05 08:25 752  
[TXT]run_spp.sh2025-12-05 08:25 153  
[TXT]samtools-index-1x36mers.sh2025-12-05 08:25 121  
[TXT]samtools-index-2x36mers.sh2025-12-05 08:25 248  
[TXT]wigtobigwig-wigplusminus-2x36mers.sh2025-12-05 08:25 522  
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