python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L4901-HEK_GFP_1_MNase.2x36mers.unique.bam SAMstats-L4901-HEK_GFP_1_MNase.2x36mers.unique -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L4901-HEK_GFP_1_MNase.2x36mers.unique.dedup.bam SAMstats-L4901-HEK_GFP_1_MNase.2x36mers.unique.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired