module load java; java -Xmx4G -jar /oak/stanford/groups/akundaje/marinovg/programs/picard-tools-1.99/MarkDuplicates.jar INPUT=L4901-HEK_GFP_1_MNase.2x36mers.unique.bam OUTPUT=L4901-HEK_GFP_1_MNase.2x36mers.unique.dedup.bam METRICS_FILE=L4901-HEK_GFP_1_MNase.2x36mers.unique.dedup.metric VALIDATION_STRINGENCY=LENIENT ASSUME_SORTED=true REMOVE_DUPLICATES=true