| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-25 | -5.872e+01 | 0.0000 | 112.0 | 18.39% | 2718.6 | 5.95% | motif file (matrix) |
pdf |
| 2 |  | REB1/SacCer-Promoters/Homer | 1e-17 | -3.974e+01 | 0.0000 | 65.0 | 10.67% | 1387.4 | 3.04% | motif file (matrix) |
pdf |
| 3 |  | SeqBias: GA-repeat | 1e-10 | -2.341e+01 | 0.0000 | 402.0 | 66.01% | 24249.9 | 53.09% | motif file (matrix) |
pdf |
| 4 |  | RLR1?/SacCer-Promoters/Homer | 1e-8 | -2.064e+01 | 0.0000 | 124.0 | 20.36% | 5389.0 | 11.80% | motif file (matrix) |
pdf |
| 5 |  | GAGA-repeat/SacCer-Promoters/Homer | 1e-7 | -1.668e+01 | 0.0000 | 302.0 | 49.59% | 17772.9 | 38.91% | motif file (matrix) |
pdf |
| 6 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.226e+01 | 0.0003 | 39.0 | 6.40% | 1317.8 | 2.88% | motif file (matrix) |
pdf |
| 7 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.128e+01 | 0.0007 | 45.0 | 7.39% | 1689.0 | 3.70% | motif file (matrix) |
pdf |
| 8 |  | SUT1?/SacCer-Promoters/Homer | 1e-4 | -9.904e+00 | 0.0024 | 261.0 | 42.86% | 16055.6 | 35.15% | motif file (matrix) |
pdf |
| 9 |  | SeqBias: TA-repeat | 1e-4 | -9.412e+00 | 0.0035 | 359.0 | 58.95% | 23412.3 | 51.25% | motif file (matrix) |
pdf |
| 10 |  | TATA-box/SacCer-Promoters/Homer | 1e-3 | -8.910e+00 | 0.0052 | 117.0 | 19.21% | 6308.7 | 13.81% | motif file (matrix) |
pdf |
| 11 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-3 | -8.860e+00 | 0.0052 | 36.0 | 5.91% | 1381.8 | 3.02% | motif file (matrix) |
pdf |
| 12 |  | E-box/Arabidopsis-Promoters/Homer | 1e-3 | -8.534e+00 | 0.0063 | 36.0 | 5.91% | 1405.2 | 3.08% | motif file (matrix) |
pdf |
| 13 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-3 | -8.487e+00 | 0.0063 | 43.0 | 7.06% | 1795.4 | 3.93% | motif file (matrix) |
pdf |
| 14 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.277e+00 | 0.0070 | 27.0 | 4.43% | 949.8 | 2.08% | motif file (matrix) |
pdf |
| 15 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.093e+00 | 0.0079 | 28.0 | 4.60% | 1012.5 | 2.22% | motif file (matrix) |
pdf |
| 16 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-3 | -7.959e+00 | 0.0085 | 57.0 | 9.36% | 2660.0 | 5.82% | motif file (matrix) |
pdf |
| 17 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-3 | -7.500e+00 | 0.0126 | 24.0 | 3.94% | 845.0 | 1.85% | motif file (matrix) |
pdf |
| 18 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.358e+00 | 0.0137 | 53.0 | 8.70% | 2487.3 | 5.45% | motif file (matrix) |
pdf |
| 19 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-3 | -7.192e+00 | 0.0153 | 23.0 | 3.78% | 812.1 | 1.78% | motif file (matrix) |
pdf |
| 20 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.102e+00 | 0.0159 | 29.0 | 4.76% | 1134.6 | 2.48% | motif file (matrix) |
pdf |
| 21 |  | SeqBias: CG bias | 1e-3 | -7.087e+00 | 0.0159 | 395.0 | 64.86% | 26746.6 | 58.55% | motif file (matrix) |
pdf |
| 22 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-3 | -6.968e+00 | 0.0166 | 36.0 | 5.91% | 1533.2 | 3.36% | motif file (matrix) |
pdf |
| 23 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-2 | -6.574e+00 | 0.0235 | 69.0 | 11.33% | 3573.2 | 7.82% | motif file (matrix) |
pdf |
| 24 |  | E-box(bHLH)/Promoter/Homer | 1e-2 | -5.744e+00 | 0.0516 | 9.0 | 1.48% | 220.0 | 0.48% | motif file (matrix) |
pdf |
| 25 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.580e+00 | 0.0584 | 41.0 | 6.73% | 1968.4 | 4.31% | motif file (matrix) |
pdf |
| 26 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-2 | -5.397e+00 | 0.0674 | 63.0 | 10.34% | 3367.3 | 7.37% | motif file (matrix) |
pdf |
| 27 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -5.346e+00 | 0.0683 | 37.0 | 6.08% | 1755.0 | 3.84% | motif file (matrix) |
pdf |
| 28 |  | Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.148e+00 | 0.0803 | 23.0 | 3.78% | 959.4 | 2.10% | motif file (matrix) |
pdf |
| 29 |  | TATA-Box(TBP)/Promoter/Homer | 1e-2 | -5.121e+00 | 0.0803 | 125.0 | 20.53% | 7566.9 | 16.57% | motif file (matrix) |
pdf |
| 30 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-2 | -4.915e+00 | 0.0946 | 83.0 | 13.63% | 4761.7 | 10.42% | motif file (matrix) |
pdf |
| 31 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-2 | -4.652e+00 | 0.1191 | 56.0 | 9.20% | 3037.0 | 6.65% | motif file (matrix) |
pdf |