Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 609)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45691)	% of Background Sequences with Motif
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-25	-5.872e+01	0.0000	112.0	18.39%	2718.6	5.95%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-17	-3.974e+01	0.0000	65.0	10.67%	1387.4	3.04%
SeqBias: GA-repeat	GAGAGAGAGA	1e-10	-2.341e+01	0.0000	402.0	66.01%	24249.9	53.09%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-8	-2.064e+01	0.0000	124.0	20.36%	5389.0	11.80%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-7	-1.668e+01	0.0000	302.0	49.59%	17772.9	38.91%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-5	-1.226e+01	0.0003	39.0	6.40%	1317.8	2.88%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-4	-1.128e+01	0.0007	45.0	7.39%	1689.0	3.70%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-4	-9.904e+00	0.0024	261.0	42.86%	16055.6	35.15%
SeqBias: TA-repeat	TATATATATA	1e-4	-9.412e+00	0.0035	359.0	58.95%	23412.3	51.25%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-3	-8.910e+00	0.0052	117.0	19.21%	6308.7	13.81%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-3	-8.860e+00	0.0052	36.0	5.91%	1381.8	3.02%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-3	-8.534e+00	0.0063	36.0	5.91%	1405.2	3.08%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-8.487e+00	0.0063	43.0	7.06%	1795.4	3.93%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-3	-8.277e+00	0.0070	27.0	4.43%	949.8	2.08%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-8.093e+00	0.0079	28.0	4.60%	1012.5	2.22%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-3	-7.959e+00	0.0085	57.0	9.36%	2660.0	5.82%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.500e+00	0.0126	24.0	3.94%	845.0	1.85%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-3	-7.358e+00	0.0137	53.0	8.70%	2487.3	5.45%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-3	-7.192e+00	0.0153	23.0	3.78%	812.1	1.78%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-3	-7.102e+00	0.0159	29.0	4.76%	1134.6	2.48%
SeqBias: CG bias	SSSSSSSSSS	1e-3	-7.087e+00	0.0159	395.0	64.86%	26746.6	58.55%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-6.968e+00	0.0166	36.0	5.91%	1533.2	3.36%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-2	-6.574e+00	0.0235	69.0	11.33%	3573.2	7.82%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-5.744e+00	0.0516	9.0	1.48%	220.0	0.48%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.580e+00	0.0584	41.0	6.73%	1968.4	4.31%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-2	-5.397e+00	0.0674	63.0	10.34%	3367.3	7.37%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-5.346e+00	0.0683	37.0	6.08%	1755.0	3.84%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-5.148e+00	0.0803	23.0	3.78%	959.4	2.10%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.121e+00	0.0803	125.0	20.53%	7566.9	16.57%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-2	-4.915e+00	0.0946	83.0	13.63%	4761.7	10.42%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-2	-4.652e+00	0.1191	56.0	9.20%	3037.0	6.65%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-4.590e+00	0.1228	89.0	14.61%	5230.0	11.45%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-4.583e+00	0.1228	27.0	4.43%	1242.7	2.72%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-4.482e+00	0.1288	11.0	1.81%	366.7	0.80%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-1	-4.446e+00	0.1296	24.0	3.94%	1080.8	2.37%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-4.315e+00	0.1437	35.0	5.75%	1757.1	3.85%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-4.312e+00	0.1437	32.0	5.25%	1573.6	3.44%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-4.239e+00	0.1469	34.0	5.58%	1705.8	3.73%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-4.025e+00	0.1772	16.0	2.63%	661.1	1.45%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-1	-3.713e+00	0.2361	29.0	4.76%	1464.9	3.21%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.690e+00	0.2361	44.0	7.22%	2420.4	5.30%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.631e+00	0.2440	45.0	7.39%	2495.8	5.46%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.603e+00	0.2453	26.0	4.27%	1293.6	2.83%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.418e+00	0.2883	18.0	2.96%	831.6	1.82%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-3.260e+00	0.3303	4.0	0.66%	94.3	0.21%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.206e+00	0.3408	119.0	19.54%	7665.4	16.78%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.028e+00	0.3987	72.0	11.82%	4436.4	9.71%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.960e+00	0.4178	103.0	16.91%	6614.5	14.48%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.895e+00	0.4367	60.0	9.85%	3647.7	7.99%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-2.843e+00	0.4510	7.0	1.15%	256.1	0.56%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.828e+00	0.4510	16.0	2.63%	774.7	1.70%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-1	-2.822e+00	0.4510	100.0	16.42%	6446.3	14.11%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-1	-2.727e+00	0.4779	140.0	22.99%	9327.6	20.42%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.689e+00	0.4868	4.0	0.66%	114.0	0.25%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.668e+00	0.4885	7.0	1.15%	267.4	0.59%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-2.614e+00	0.5060	13.0	2.13%	616.8	1.35%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-2.602e+00	0.5060	20.0	3.28%	1050.7	2.30%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.542e+00	0.5250	11.0	1.81%	504.6	1.10%
SeqBias: CG-repeat	CGCGCGCGCG	1e-1	-2.530e+00	0.5250	38.0	6.24%	2240.2	4.90%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-2.480e+00	0.5400	40.0	6.57%	2385.6	5.22%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.457e+00	0.5439	595.0	97.70%	44146.3	96.65%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.443e+00	0.5439	28.0	4.60%	1592.0	3.49%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-2.397e+00	0.5589	14.0	2.30%	701.4	1.54%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.351e+00	0.5761	7.0	1.15%	289.8	0.63%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.347e+00	0.5761	118.0	19.38%	7893.9	17.28%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.294e+00	0.5917	60.0	9.85%	3804.5	8.33%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.270e+00	0.5969	6.0	0.99%	239.5	0.52%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.247e+00	0.6015	21.0	3.45%	1167.0	2.55%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.163e+00	0.6452	8.0	1.31%	362.8	0.79%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.142e+00	0.6494	16.0	2.63%	860.7	1.88%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.103e+00	0.6657	5.0	0.82%	196.0	0.43%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.052e+00	0.6907	12.0	1.97%	619.0	1.36%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.039e+00	0.6907	11.0	1.81%	557.7	1.22%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.005e+00	0.7042	14.0	2.30%	751.3	1.64%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.973e+00	0.7174	299.0	49.10%	21387.6	46.82%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.943e+00	0.7294	36.0	5.91%	2236.9	4.90%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.925e+00	0.7333	41.0	6.73%	2586.9	5.66%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.886e+00	0.7522	44.0	7.22%	2805.8	6.14%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-1.841e+00	0.7770	225.0	36.95%	15956.9	34.93%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.823e+00	0.7813	57.0	9.36%	3737.3	8.18%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.801e+00	0.7890	161.0	26.44%	11262.9	24.66%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.794e+00	0.7890	72.0	11.82%	4813.2	10.54%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.783e+00	0.7890	13.0	2.13%	718.9	1.57%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.778e+00	0.7890	53.0	8.70%	3469.8	7.60%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.766e+00	0.7890	102.0	16.75%	6981.5	15.28%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.725e+00	0.8015	78.0	12.81%	5269.9	11.54%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.702e+00	0.8113	185.0	30.38%	13081.1	28.64%
SeqBias: CA-repeat	CACACACACA	1e0	-1.693e+00	0.8113	277.0	45.48%	19913.9	43.60%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.655e+00	0.8311	56.0	9.20%	3723.1	8.15%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.648e+00	0.8311	24.0	3.94%	1481.6	3.24%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.639e+00	0.8311	71.0	11.66%	4801.5	10.51%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.632e+00	0.8311	7.0	1.15%	353.0	0.77%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.608e+00	0.8336	9.0	1.48%	483.5	1.06%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.602e+00	0.8336	46.0	7.55%	3031.2	6.64%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.600e+00	0.8336	45.0	7.39%	2961.8	6.48%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.598e+00	0.8336	14.0	2.30%	813.2	1.78%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.566e+00	0.8337	8.0	1.31%	425.0	0.93%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.563e+00	0.8337	3.0	0.49%	118.1	0.26%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.548e+00	0.8337	24.0	3.94%	1504.8	3.29%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.544e+00	0.8337	48.0	7.88%	3192.9	6.99%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.530e+00	0.8337	3.0	0.49%	120.5	0.26%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.527e+00	0.8337	10.0	1.64%	559.9	1.23%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.512e+00	0.8337	114.0	18.72%	7975.7	17.46%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.505e+00	0.8337	54.0	8.87%	3634.0	7.96%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.494e+00	0.8337	26.0	4.27%	1656.3	3.63%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.479e+00	0.8337	10.0	1.64%	567.0	1.24%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.470e+00	0.8337	22.0	3.61%	1384.7	3.03%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.435e+00	0.8535	13.0	2.13%	775.0	1.70%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.428e+00	0.8535	27.0	4.43%	1743.9	3.82%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.425e+00	0.8535	65.0	10.67%	4456.7	9.76%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.420e+00	0.8535	68.0	11.17%	4675.5	10.24%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.410e+00	0.8535	1.0	0.16%	21.6	0.05%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.407e+00	0.8535	14.0	2.30%	847.0	1.85%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.406e+00	0.8535	10.0	1.64%	577.9	1.27%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.401e+00	0.8535	29.0	4.76%	1892.0	4.14%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.400e+00	0.8535	10.0	1.64%	578.6	1.27%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.393e+00	0.8535	36.0	5.91%	2389.7	5.23%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.383e+00	0.8535	15.0	2.46%	921.0	2.02%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.335e+00	0.8561	609.0	100.00%	45578.0	99.78%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.334e+00	0.8561	11.0	1.81%	656.2	1.44%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.331e+00	0.8561	2.0	0.33%	75.8	0.17%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.316e+00	0.8561	63.0	10.34%	4358.8	9.54%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.280e+00	0.8748	5.0	0.82%	264.0	0.58%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.255e+00	0.8894	19.0	3.12%	1226.2	2.68%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.222e+00	0.9121	12.0	1.97%	746.0	1.63%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.217e+00	0.9121	18.0	2.96%	1165.1	2.55%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.209e+00	0.9121	2.0	0.33%	82.0	0.18%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.207e+00	0.9121	4.0	0.66%	207.5	0.45%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.206e+00	0.9121	10.0	1.64%	610.7	1.34%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.197e+00	0.9121	4.0	0.66%	208.7	0.46%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.170e+00	0.9164	13.0	2.13%	825.9	1.81%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.165e+00	0.9164	48.0	7.88%	3335.1	7.30%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.159e+00	0.9164	58.0	9.52%	4065.9	8.90%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.152e+00	0.9164	3.0	0.49%	148.9	0.33%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.145e+00	0.9164	81.0	13.30%	5755.8	12.60%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.126e+00	0.9231	25.0	4.11%	1688.2	3.70%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.118e+00	0.9235	11.0	1.81%	696.2	1.52%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.095e+00	0.9383	5.0	0.82%	286.8	0.63%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.094e+00	0.9383	9.0	1.48%	561.8	1.23%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.087e+00	0.9383	37.0	6.08%	2568.4	5.62%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.081e+00	0.9383	52.0	8.54%	3663.1	8.02%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.080e+00	0.9383	137.0	22.50%	9928.3	21.74%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.062e+00	0.9383	24.0	3.94%	1636.5	3.58%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.058e+00	0.9383	15.0	2.46%	992.2	2.17%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.054e+00	0.9383	15.0	2.46%	993.5	2.17%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.048e+00	0.9383	7.0	1.15%	430.8	0.94%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.042e+00	0.9383	26.0	4.27%	1787.3	3.91%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.027e+00	0.9383	172.0	28.24%	12568.2	27.51%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.023e+00	0.9383	8.0	1.31%	504.2	1.10%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.016e+00	0.9383	102.0	16.75%	7380.7	16.16%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.013e+00	0.9383	5.0	0.82%	297.7	0.65%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.004e+00	0.9383	3.0	0.49%	162.5	0.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.004e+00	0.9383	3.0	0.49%	162.5	0.36%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.003e+00	0.9383	20.0	3.28%	1366.1	2.99%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.941e-01	0.9383	76.0	12.48%	5472.2	11.98%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.938e-01	0.9383	3.0	0.49%	163.2	0.36%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-9.841e-01	0.9383	3.0	0.49%	164.8	0.36%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-9.451e-01	0.9520	60.0	9.85%	4319.1	9.46%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.300e-01	0.9604	4.0	0.66%	239.8	0.53%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-9.251e-01	0.9604	104.0	17.08%	7590.6	16.62%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.083e-01	0.9692	8.0	1.31%	526.3	1.15%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.038e-01	0.9692	5.0	0.82%	313.2	0.69%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-9.030e-01	0.9692	141.0	23.15%	10359.0	22.68%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-8.889e-01	0.9702	9.0	1.48%	602.5	1.32%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-8.832e-01	0.9702	1.0	0.16%	40.4	0.09%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.795e-01	0.9702	25.0	4.11%	1772.8	3.88%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-8.686e-01	0.9722	79.0	12.97%	5772.2	12.64%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-8.658e-01	0.9722	62.0	10.18%	4512.8	9.88%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-8.619e-01	0.9722	9.0	1.48%	608.6	1.33%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.611e-01	0.9722	114.0	18.72%	8381.7	18.35%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.490e-01	0.9722	24.0	3.94%	1710.4	3.74%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.471e-01	0.9722	11.0	1.81%	757.4	1.66%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.432e-01	0.9722	11.0	1.81%	758.9	1.66%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.312e-01	0.9722	6.0	0.99%	397.1	0.87%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-8.285e-01	0.9722	12.0	1.97%	835.6	1.83%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-8.206e-01	0.9722	6.0	0.99%	399.6	0.87%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-8.188e-01	0.9722	166.0	27.26%	12297.2	26.92%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-8.186e-01	0.9722	9.0	1.48%	618.0	1.35%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-8.000e-01	0.9722	104.0	17.08%	7683.8	16.82%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.997e-01	0.9722	40.0	6.57%	2916.9	6.39%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-7.981e-01	0.9722	37.0	6.08%	2694.7	5.90%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-7.812e-01	0.9736	2.0	0.33%	116.8	0.26%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.789e-01	0.9736	80.0	13.14%	5908.7	12.94%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.772e-01	0.9736	9.0	1.48%	628.6	1.38%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.718e-01	0.9736	11.0	1.81%	777.7	1.70%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.585e-01	0.9745	48.0	7.88%	3534.4	7.74%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.573e-01	0.9745	137.0	22.50%	10185.0	22.30%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.300e-01	0.9920	27.0	4.43%	1982.0	4.34%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-7.167e-01	1.0000	113.0	18.56%	8425.8	18.45%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.164e-01	1.0000	28.0	4.60%	2063.3	4.52%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.127e-01	1.0000	89.0	14.61%	6631.1	14.52%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.008e-01	1.0000	22.0	3.61%	1622.0	3.55%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.923e-01	1.0000	74.0	12.15%	5523.5	12.09%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-6.870e-01	1.0000	25.0	4.11%	1852.6	4.06%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.644e-01	1.0000	52.0	8.54%	3892.3	8.52%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.624e-01	1.0000	13.0	2.13%	960.5	2.10%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-6.552e-01	1.0000	145.0	23.81%	10883.7	23.83%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.551e-01	1.0000	5.0	0.82%	358.2	0.78%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-6.282e-01	1.0000	73.0	11.99%	5498.6	12.04%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.238e-01	1.0000	71.0	11.66%	5351.5	11.72%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.215e-01	1.0000	312.0	51.23%	23450.0	51.34%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.188e-01	1.0000	24.0	3.94%	1809.5	3.96%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.185e-01	1.0000	1.0	0.16%	58.7	0.13%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.164e-01	1.0000	6.0	0.99%	443.7	0.97%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-6.088e-01	1.0000	18.0	2.96%	1359.6	2.98%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.079e-01	1.0000	21.0	3.45%	1588.0	3.48%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.955e-01	1.0000	13.0	2.13%	984.3	2.15%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.921e-01	1.0000	2.0	0.33%	139.2	0.30%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.907e-01	1.0000	4.0	0.66%	295.6	0.65%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-5.904e-01	1.0000	66.0	10.84%	5002.0	10.95%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.880e-01	1.0000	5.0	0.82%	373.2	0.82%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-5.851e-01	1.0000	38.0	6.24%	2888.3	6.32%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-5.802e-01	1.0000	55.0	9.03%	4178.6	9.15%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.792e-01	1.0000	160.0	26.27%	12093.6	26.48%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-5.763e-01	1.0000	65.0	10.67%	4937.4	10.81%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-5.734e-01	1.0000	6.0	0.99%	454.1	0.99%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.589e-01	1.0000	5.0	0.82%	380.3	0.83%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-5.585e-01	1.0000	30.0	4.93%	2297.3	5.03%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.502e-01	1.0000	19.0	3.12%	1462.5	3.20%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.449e-01	1.0000	1.0	0.16%	65.4	0.14%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-5.449e-01	1.0000	1.0	0.16%	65.1	0.14%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.279e-01	1.0000	11.0	1.81%	856.4	1.87%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-5.068e-01	1.0000	609.0	100.00%	45640.8	99.92%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-5.002e-01	1.0000	85.0	13.96%	6521.3	14.28%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.952e-01	1.0000	3.0	0.49%	236.1	0.52%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-4.902e-01	1.0000	56.0	9.20%	4327.1	9.47%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.885e-01	1.0000	86.0	14.12%	6609.2	14.47%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.824e-01	1.0000	6.0	0.99%	480.4	1.05%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.767e-01	1.0000	14.0	2.30%	1111.7	2.43%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-4.761e-01	1.0000	29.0	4.76%	2272.6	4.98%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.624e-01	1.0000	5.0	0.82%	406.5	0.89%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.607e-01	1.0000	99.0	16.26%	7626.5	16.70%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.562e-01	1.0000	40.0	6.57%	3132.7	6.86%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-4.535e-01	1.0000	609.0	100.00%	45644.2	99.92%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-4.481e-01	1.0000	188.0	30.87%	14373.0	31.47%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.437e-01	1.0000	122.0	20.03%	9391.6	20.56%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.284e-01	1.0000	35.0	5.75%	2769.3	6.06%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.256e-01	1.0000	54.0	8.87%	4233.3	9.27%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.222e-01	1.0000	2.0	0.33%	168.6	0.37%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.185e-01	1.0000	74.0	12.15%	5771.3	12.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.025e-01	1.0000	3.0	0.49%	258.4	0.57%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.959e-01	1.0000	4.0	0.66%	344.3	0.75%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.927e-01	1.0000	4.0	0.66%	345.2	0.76%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.906e-01	1.0000	71.0	11.66%	5573.4	12.20%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-3.832e-01	1.0000	40.0	6.57%	3194.9	6.99%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.819e-01	1.0000	18.0	2.96%	1478.0	3.24%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.682e-01	1.0000	49.0	8.05%	3905.3	8.55%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-3.624e-01	1.0000	5.0	0.82%	439.9	0.96%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.605e-01	1.0000	35.0	5.75%	2826.5	6.19%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.563e-01	1.0000	69.0	11.33%	5460.2	11.95%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-3.535e-01	1.0000	97.0	15.93%	7610.3	16.66%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.494e-01	1.0000	3.0	0.49%	274.0	0.60%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-3.419e-01	1.0000	86.0	14.12%	6784.8	14.85%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.411e-01	1.0000	1.0	0.16%	93.7	0.21%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.287e-01	1.0000	31.0	5.09%	2542.4	5.57%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.262e-01	1.0000	96.0	15.76%	7573.7	16.58%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-3.239e-01	1.0000	29.0	4.76%	2389.7	5.23%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-3.183e-01	1.0000	25.0	4.11%	2078.4	4.55%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.169e-01	1.0000	22.0	3.61%	1841.4	4.03%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.168e-01	1.0000	4.0	0.66%	371.7	0.81%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.143e-01	1.0000	5.0	0.82%	458.4	1.00%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-3.128e-01	1.0000	45.0	7.39%	3654.6	8.00%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.120e-01	1.0000	98.0	16.09%	7748.8	16.96%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.068e-01	1.0000	2.0	0.33%	196.9	0.43%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.004e-01	1.0000	3.0	0.49%	289.1	0.63%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.937e-01	1.0000	19.0	3.12%	1620.4	3.55%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.891e-01	1.0000	4.0	0.66%	382.4	0.84%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.859e-01	1.0000	25.0	4.11%	2107.4	4.61%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.849e-01	1.0000	6.0	0.99%	557.1	1.22%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.834e-01	1.0000	2.0	0.33%	203.8	0.45%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.832e-01	1.0000	294.0	48.28%	22648.9	49.58%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.789e-01	1.0000	10.0	1.64%	897.1	1.96%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.687e-01	1.0000	7.0	1.15%	651.3	1.43%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.685e-01	1.0000	34.0	5.58%	2840.5	6.22%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.679e-01	1.0000	2.0	0.33%	208.7	0.46%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.656e-01	1.0000	3.0	0.49%	302.8	0.66%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.570e-01	1.0000	40.0	6.57%	3328.2	7.29%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.562e-01	1.0000	5.0	0.82%	485.4	1.06%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.549e-01	1.0000	4.0	0.66%	397.6	0.87%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.539e-01	1.0000	1.0	0.16%	112.2	0.25%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.511e-01	1.0000	17.0	2.79%	1494.8	3.27%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.421e-01	1.0000	10.0	1.64%	922.3	2.02%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-2.400e-01	1.0000	609.0	100.00%	45660.1	99.96%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-2.361e-01	1.0000	75.0	12.32%	6098.9	13.35%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.319e-01	1.0000	1.0	0.16%	118.5	0.26%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.284e-01	1.0000	35.0	5.75%	2968.0	6.50%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.271e-01	1.0000	113.0	18.56%	9053.1	19.82%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.223e-01	1.0000	19.0	3.12%	1685.6	3.69%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.196e-01	1.0000	10.0	1.64%	939.3	2.06%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.175e-01	1.0000	14.0	2.30%	1277.2	2.80%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.045e-01	1.0000	19.0	3.12%	1704.7	3.73%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.036e-01	1.0000	134.0	22.00%	10720.3	23.47%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.978e-01	1.0000	4.0	0.66%	427.5	0.94%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.968e-01	1.0000	1.0	0.16%	129.1	0.28%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.936e-01	1.0000	7.0	1.15%	701.0	1.53%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.891e-01	1.0000	34.0	5.58%	2943.3	6.44%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.878e-01	1.0000	28.0	4.60%	2460.3	5.39%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.867e-01	1.0000	33.0	5.42%	2866.2	6.27%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.867e-01	1.0000	3.0	0.49%	339.3	0.74%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.832e-01	1.0000	15.0	2.46%	1395.3	3.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.710e-01	1.0000	4.0	0.66%	444.6	0.97%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.701e-01	1.0000	17.0	2.79%	1578.0	3.45%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.677e-01	1.0000	16.0	2.63%	1497.5	3.28%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.625e-01	1.0000	11.0	1.81%	1077.0	2.36%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.603e-01	1.0000	1.0	0.16%	143.4	0.31%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.603e-01	1.0000	1.0	0.16%	143.1	0.31%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.597e-01	1.0000	2.0	0.33%	254.1	0.56%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.551e-01	1.0000	25.0	4.11%	2263.1	4.95%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.524e-01	1.0000	6.0	0.99%	644.0	1.41%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.472e-01	1.0000	51.0	8.37%	4382.0	9.59%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.460e-01	1.0000	7.0	1.15%	741.1	1.62%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.386e-01	1.0000	24.0	3.94%	2207.3	4.83%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.374e-01	1.0000	119.0	19.54%	9746.8	21.34%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.366e-01	1.0000	43.0	7.06%	3763.1	8.24%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.289e-01	1.0000	20.0	3.28%	1889.5	4.14%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.274e-01	1.0000	1.0	0.16%	160.0	0.35%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.270e-01	1.0000	62.0	10.18%	5308.9	11.62%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.269e-01	1.0000	134.0	22.00%	10942.9	23.96%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.251e-01	1.0000	42.0	6.90%	3708.6	8.12%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.186e-01	1.0000	1.0	0.16%	164.6	0.36%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.172e-01	1.0000	46.0	7.55%	4051.9	8.87%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.170e-01	1.0000	1.0	0.16%	165.9	0.36%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.124e-01	1.0000	8.0	1.31%	870.1	1.90%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.096e-01	1.0000	71.0	11.66%	6074.8	13.30%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.090e-01	1.0000	1.0	0.16%	170.7	0.37%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.074e-01	1.0000	27.0	4.43%	2517.0	5.51%
Tal1	CATCTG	1e0	-1.066e-01	1.0000	47.0	7.72%	4160.7	9.11%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.057e-01	1.0000	149.0	24.47%	12182.9	26.67%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.050e-01	1.0000	30.0	4.93%	2772.7	6.07%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-9.669e-02	1.0000	100.0	16.42%	8409.7	18.41%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-9.372e-02	1.0000	79.0	12.97%	6764.3	14.81%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-9.341e-02	1.0000	76.0	12.48%	6527.9	14.29%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-9.129e-02	1.0000	27.0	4.43%	2556.0	5.60%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-8.948e-02	1.0000	1.0	0.16%	184.4	0.40%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-8.591e-02	1.0000	29.0	4.76%	2737.6	5.99%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.580e-02	1.0000	1.0	0.16%	187.0	0.41%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-8.543e-02	1.0000	10.0	1.64%	1094.2	2.40%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.464e-02	1.0000	1.0	0.16%	197.4	0.43%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-7.414e-02	1.0000	19.0	3.12%	1917.7	4.20%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.267e-02	1.0000	2.0	0.33%	324.9	0.71%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.210e-02	1.0000	4.0	0.66%	542.2	1.19%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-7.086e-02	1.0000	596.0	97.87%	45009.1	98.53%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.942e-02	1.0000	5.0	0.82%	648.1	1.42%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-6.362e-02	1.0000	17.0	2.79%	1771.6	3.88%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.083e-02	1.0000	10.0	1.64%	1146.7	2.51%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.263e-02	1.0000	26.0	4.27%	2592.9	5.68%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-5.249e-02	1.0000	15.0	2.46%	1627.9	3.56%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-5.210e-02	1.0000	3.0	0.49%	470.0	1.03%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.474e-02	1.0000	21.0	3.45%	2190.3	4.79%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.048e-02	1.0000	70.0	11.49%	6314.9	13.82%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-3.585e-02	1.0000	11.0	1.81%	1319.0	2.89%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.397e-02	1.0000	31.0	5.09%	3116.7	6.82%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.909e-02	1.0000	115.0	18.88%	10025.9	21.95%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.724e-02	1.0000	2.0	0.33%	410.0	0.90%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.497e-02	1.0000	150.0	24.63%	12832.6	28.09%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.361e-02	1.0000	1.0	0.16%	281.9	0.62%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.170e-02	1.0000	91.0	14.94%	8200.9	17.95%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.139e-02	1.0000	11.0	1.81%	1394.9	3.05%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.803e-02	1.0000	107.0	17.57%	9542.1	20.89%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.601e-02	1.0000	24.0	3.94%	2649.6	5.80%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.538e-02	1.0000	21.0	3.45%	2385.0	5.22%
 Ik-1	NHTTGGGAATRCC	1e0	-1.333e-02	1.0000	609.0	100.00%	45678.4	100.00%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.219e-02	1.0000	31.0	5.09%	3325.8	7.28%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.070e-02	1.0000	49.0	8.05%	4914.1	10.76%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.487e-03	1.0000	23.0	3.78%	2815.9	6.16%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.306e-03	1.0000	43.0	7.06%	4639.9	10.16%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.690e-04	1.0000	6.0	0.99%	1237.4	2.71%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	0.0	0.00%	122.5	0.27%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	34.4	0.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	16.3	0.04%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	27.0	0.06%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	42.9	0.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	39.7	0.09%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	0.000e+00	1.0000	0.0	0.00%	167.9	0.37%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	99.2	0.22%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	5.3	0.01%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	35.6	0.08%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.2	0.01%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	101.6	0.22%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.00%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	0.000e+00	1.0000	0.0	0.00%	107.7	0.24%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.1	0.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	82.2	0.18%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	43.3	0.09%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	15.7	0.03%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	50.2	0.11%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	17.2	0.04%