Homer Known Motif Enrichment Results (/oak/stanford/groups/akundaje/projects/alzheimers_parkinsons/pseudobulk/homer/background_genome_overlap/Cluster23)

Rank	Motif	Name	P-value	log P-pvalue	q-value (Benjamini)	# Target Sequences with Motif	% of Targets Sequences with Motif	# Background Sequences with Motif	% of Background Sequences with Motif	Motif File	PDF
1		CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	1e-6683	-1.539e+04	0.0000	9391.0	11.43%	755.2	0.93%	motif file (matrix)	pdf
2		BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	1e-4167	-9.596e+03	0.0000	9819.0	11.95%	1662.6	2.05%	motif file (matrix)	pdf
3		Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	1e-804	-1.853e+03	0.0000	18607.0	22.64%	11869.8	14.65%	motif file (matrix)	pdf
4		Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	1e-757	-1.743e+03	0.0000	17650.0	21.48%	11252.5	13.89%	motif file (matrix)	pdf
5		Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	1e-687	-1.583e+03	0.0000	10323.0	12.56%	5701.5	7.04%	motif file (matrix)	pdf
6		Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	1e-684	-1.577e+03	0.0000	10068.0	12.25%	5518.0	6.81%	motif file (matrix)	pdf
7		Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	1e-612	-1.411e+03	0.0000	16584.0	20.18%	10914.2	13.48%	motif file (matrix)	pdf
8		Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	1e-588	-1.355e+03	0.0000	9771.0	11.89%	5561.7	6.87%	motif file (matrix)	pdf
9		Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	1e-484	-1.116e+03	0.0000	12089.0	14.71%	7724.7	9.54%	motif file (matrix)	pdf
10		Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	1e-318	-7.338e+02	0.0000	14285.0	17.38%	10312.3	12.73%	motif file (matrix)	pdf
11		SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	1e-293	-6.761e+02	0.0000	43761.0	53.25%	37953.0	46.86%	motif file (matrix)	pdf
12		Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	1e-285	-6.565e+02	0.0000	12229.0	14.88%	8728.4	10.78%	motif file (matrix)	pdf
13		Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	1e-284	-6.555e+02	0.0000	11553.0	14.06%	8155.8	10.07%	motif file (matrix)	pdf
14		NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	1e-257	-5.940e+02	0.0000	18279.0	22.24%	14205.1	17.54%	motif file (matrix)	pdf
15		Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	1e-245	-5.661e+02	0.0000	12452.0	15.15%	9139.7	11.28%	motif file (matrix)	pdf
16		NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	1e-224	-5.164e+02	0.0000	9274.0	11.28%	6541.1	8.08%	motif file (matrix)	pdf
17		Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	1e-190	-4.378e+02	0.0000	29152.0	35.47%	24842.7	30.67%	motif file (matrix)	pdf
18		MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	1e-186	-4.295e+02	0.0000	11925.0	14.51%	9052.1	11.18%	motif file (matrix)	pdf
19		MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	1e-178	-4.113e+02	0.0000	9536.0	11.60%	7023.0	8.67%	motif file (matrix)	pdf
20		NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	1e-177	-4.096e+02	0.0000	5055.0	6.15%	3279.6	4.05%	motif file (matrix)	pdf
21		Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	1e-176	-4.071e+02	0.0000	8066.0	9.81%	5776.8	7.13%	motif file (matrix)	pdf
22		Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	1e-159	-3.672e+02	0.0000	18462.0	22.46%	15154.5	18.71%	motif file (matrix)	pdf
23		NFY(CCAAT)/Promoter/Homer	1e-122	-2.817e+02	0.0000	7123.0	8.67%	5297.7	6.54%	motif file (matrix)	pdf
24		Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	1e-121	-2.788e+02	0.0000	4537.0	5.52%	3117.1	3.85%	motif file (matrix)	pdf
25		Sp1(Zf)/Promoter/Homer	1e-116	-2.681e+02	0.0000	4982.0	6.06%	3511.2	4.34%	motif file (matrix)	pdf
26		Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	1e-114	-2.634e+02	0.0000	17243.0	20.98%	14475.2	17.87%	motif file (matrix)	pdf
27		MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	1e-108	-2.491e+02	0.0000	14499.0	17.64%	12011.0	14.83%	motif file (matrix)	pdf
28		Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	1e-107	-2.477e+02	0.0000	4795.0	5.83%	3403.4	4.20%	motif file (matrix)	pdf
29		Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	1e-102	-2.370e+02	0.0000	5368.0	6.53%	3916.0	4.83%	motif file (matrix)	pdf
30		Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	1e-102	-2.367e+02	0.0000	34166.0	41.57%	30697.6	37.90%	motif file (matrix)	pdf
31		Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	1e-99	-2.293e+02	0.0000	2838.0	3.45%	1836.5	2.27%	motif file (matrix)	pdf
32		BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	1e-99	-2.283e+02	0.0000	5200.0	6.33%	3795.8	4.69%	motif file (matrix)	pdf
33		AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	1e-94	-2.176e+02	0.0000	6012.0	7.32%	4524.0	5.59%	motif file (matrix)	pdf
34		PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	1e-92	-2.123e+02	0.0000	18243.0	22.20%	15660.7	19.34%	motif file (matrix)	pdf
35		Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	1e-92	-2.122e+02	0.0000	25457.0	30.98%	22477.3	27.75%	motif file (matrix)	pdf
36		Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	1e-90	-2.078e+02	0.0000	2093.0	2.55%	1287.9	1.59%	motif file (matrix)	pdf
37		Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	1e-85	-1.978e+02	0.0000	25753.0	31.34%	22849.8	28.21%	motif file (matrix)	pdf
38		Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	1e-83	-1.930e+02	0.0000	5711.0	6.95%	4337.9	5.36%	motif file (matrix)	pdf
39		BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	1e-80	-1.848e+02	0.0000	12126.0	14.75%	10129.3	12.51%	motif file (matrix)	pdf
40		Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	1e-79	-1.840e+02	0.0000	16183.0	19.69%	13889.5	17.15%	motif file (matrix)	pdf
41		CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	1e-77	-1.795e+02	0.0000	287.0	0.35%	73.2	0.09%	motif file (matrix)	pdf
42		Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	1e-77	-1.790e+02	0.0000	6306.0	7.67%	4905.0	6.06%	motif file (matrix)	pdf
43		Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	1e-75	-1.739e+02	0.0000	1749.0	2.13%	1075.5	1.33%	motif file (matrix)	pdf
44		AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	1e-74	-1.725e+02	0.0000	12556.0	15.28%	10585.2	13.07%	motif file (matrix)	pdf
45		MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	1e-73	-1.704e+02	0.0000	6979.0	8.49%	5531.0	6.83%	motif file (matrix)	pdf
46		ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	1e-73	-1.684e+02	0.0000	5193.0	6.32%	3964.4	4.89%	motif file (matrix)	pdf
47		Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	1e-69	-1.608e+02	0.0000	5679.0	6.91%	4415.2	5.45%	motif file (matrix)	pdf
48		RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	1e-68	-1.580e+02	0.0000	869.0	1.06%	443.2	0.55%	motif file (matrix)	pdf
49		Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	1e-65	-1.510e+02	0.0000	936.0	1.14%	498.8	0.62%	motif file (matrix)	pdf
50		AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	1e-61	-1.419e+02	0.0000	32618.0	39.69%	29868.7	36.88%	motif file (matrix)	pdf
51		Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	1e-60	-1.388e+02	0.0000	7743.0	9.42%	6346.3	7.84%	motif file (matrix)	pdf
52		NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	1e-59	-1.359e+02	0.0000	7028.0	8.55%	5713.8	7.05%	motif file (matrix)	pdf
53		FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	1e-59	-1.359e+02	0.0000	3291.0	4.00%	2421.9	2.99%	motif file (matrix)	pdf
54		MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	1e-54	-1.264e+02	0.0000	7844.0	9.54%	6495.9	8.02%	motif file (matrix)	pdf
55		Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	1e-54	-1.246e+02	0.0000	10189.0	12.40%	8653.2	10.68%	motif file (matrix)	pdf
56		CRE(bZIP)/Promoter/Homer	1e-51	-1.196e+02	0.0000	2100.0	2.56%	1461.9	1.80%	motif file (matrix)	pdf
57		JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	1e-51	-1.186e+02	0.0000	857.0	1.04%	480.2	0.59%	motif file (matrix)	pdf
58		ETS(ETS)/Promoter/Homer	1e-51	-1.177e+02	0.0000	3280.0	3.99%	2465.0	3.04%	motif file (matrix)	pdf
59		GFY-Staf(?,Zf)/Promoter/Homer	1e-50	-1.158e+02	0.0000	689.0	0.84%	362.3	0.45%	motif file (matrix)	pdf
60		Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	1e-48	-1.128e+02	0.0000	5949.0	7.24%	4842.2	5.98%	motif file (matrix)	pdf
61		Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	1e-48	-1.124e+02	0.0000	543.0	0.66%	264.9	0.33%	motif file (matrix)	pdf
62		Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	1e-48	-1.113e+02	0.0000	14696.0	17.88%	12940.3	15.98%	motif file (matrix)	pdf
63		Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	1e-48	-1.112e+02	0.0000	19063.0	23.20%	17076.8	21.08%	motif file (matrix)	pdf
64		Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	1e-48	-1.110e+02	0.0000	504.0	0.61%	239.9	0.30%	motif file (matrix)	pdf
65		ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	1e-47	-1.094e+02	0.0000	5107.0	6.21%	4101.7	5.06%	motif file (matrix)	pdf
66		X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	1e-45	-1.057e+02	0.0000	965.0	1.17%	579.1	0.71%	motif file (matrix)	pdf
67		Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	1e-44	-1.014e+02	0.0000	14793.0	18.00%	13102.3	16.18%	motif file (matrix)	pdf
68		Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	1e-42	-9.683e+01	0.0000	1783.0	2.17%	1252.4	1.55%	motif file (matrix)	pdf
69		NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	1e-41	-9.612e+01	0.0000	565.0	0.69%	296.5	0.37%	motif file (matrix)	pdf
70		NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	1e-40	-9.251e+01	0.0000	1921.0	2.34%	1378.7	1.70%	motif file (matrix)	pdf
71		Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	1e-39	-9.033e+01	0.0000	1218.0	1.48%	804.1	0.99%	motif file (matrix)	pdf
72		PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	1e-38	-8.777e+01	0.0000	4327.0	5.26%	3494.9	4.31%	motif file (matrix)	pdf
73		STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	1e-37	-8.702e+01	0.0000	7215.0	8.78%	6122.9	7.56%	motif file (matrix)	pdf
74		GFY(?)/Promoter/Homer	1e-34	-7.944e+01	0.0000	793.0	0.96%	488.2	0.60%	motif file (matrix)	pdf
75		ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	1e-33	-7.777e+01	0.0000	13091.0	15.93%	11674.5	14.41%	motif file (matrix)	pdf
76		GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	1e-32	-7.579e+01	0.0000	7883.0	9.59%	6806.6	8.40%	motif file (matrix)	pdf
77		ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	1e-30	-7.100e+01	0.0000	2095.0	2.55%	1589.0	1.96%	motif file (matrix)	pdf
78		Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	1e-30	-7.066e+01	0.0000	4052.0	4.93%	3323.7	4.10%	motif file (matrix)	pdf
79		Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	1e-30	-7.000e+01	0.0000	11846.0	14.41%	10560.7	13.04%	motif file (matrix)	pdf
80		GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	1e-30	-6.945e+01	0.0000	1849.0	2.25%	1381.6	1.71%	motif file (matrix)	pdf
81		E-box(bHLH)/Promoter/Homer	1e-29	-6.722e+01	0.0000	769.0	0.94%	490.6	0.61%	motif file (matrix)	pdf
82		Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	1e-29	-6.714e+01	0.0000	5473.0	6.66%	4635.0	5.72%	motif file (matrix)	pdf
83		Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	1e-28	-6.534e+01	0.0000	4366.0	5.31%	3633.3	4.49%	motif file (matrix)	pdf
84		ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	1e-27	-6.443e+01	0.0000	6914.0	8.41%	5980.4	7.38%	motif file (matrix)	pdf
85		Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	1e-27	-6.411e+01	0.0000	13968.0	17.00%	12622.4	15.58%	motif file (matrix)	pdf
86		Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	1e-27	-6.323e+01	0.0000	2671.0	3.25%	2120.0	2.62%	motif file (matrix)	pdf
87		ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	1e-27	-6.304e+01	0.0000	8966.0	10.91%	7904.5	9.76%	motif file (matrix)	pdf
88		Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	1e-27	-6.254e+01	0.0000	2975.0	3.62%	2393.2	2.95%	motif file (matrix)	pdf
89		GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	1e-26	-6.035e+01	0.0000	1127.0	1.37%	795.8	0.98%	motif file (matrix)	pdf
90		Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	1e-26	-6.033e+01	0.0000	13885.0	16.89%	12578.5	15.53%	motif file (matrix)	pdf
91		Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	1e-24	-5.736e+01	0.0000	7483.0	9.11%	6558.8	8.10%	motif file (matrix)	pdf
92		Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	1e-24	-5.730e+01	0.0000	1878.0	2.29%	1445.1	1.78%	motif file (matrix)	pdf
93		RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	1e-24	-5.555e+01	0.0000	7874.0	9.58%	6937.9	8.57%	motif file (matrix)	pdf
94		Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	1e-23	-5.399e+01	0.0000	11991.0	14.59%	10836.5	13.38%	motif file (matrix)	pdf
95		ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	1e-23	-5.393e+01	0.0000	11763.0	14.31%	10620.3	13.11%	motif file (matrix)	pdf
96		NRF(NRF)/Promoter/Homer	1e-23	-5.340e+01	0.0000	1972.0	2.40%	1541.8	1.90%	motif file (matrix)	pdf
97		Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	1e-22	-5.272e+01	0.0000	2910.0	3.54%	2378.6	2.94%	motif file (matrix)	pdf
98		Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	1e-22	-5.135e+01	0.0000	1173.0	1.43%	858.0	1.06%	motif file (matrix)	pdf
99		ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	1e-22	-5.114e+01	0.0000	13534.0	16.47%	12333.2	15.23%	motif file (matrix)	pdf
100		USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	1e-21	-4.978e+01	0.0000	3818.0	4.65%	3216.7	3.97%	motif file (matrix)	pdf
101		RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	1e-21	-4.900e+01	0.0000	6173.0	7.51%	5396.8	6.66%	motif file (matrix)	pdf
102		SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	1e-21	-4.895e+01	0.0000	8115.0	9.87%	7215.6	8.91%	motif file (matrix)	pdf
103		ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	1e-20	-4.723e+01	0.0000	5226.0	6.36%	4529.0	5.59%	motif file (matrix)	pdf
104		Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	1e-20	-4.656e+01	0.0000	7740.0	9.42%	6882.6	8.50%	motif file (matrix)	pdf
105		STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	1e-19	-4.497e+01	0.0000	3870.0	4.71%	3291.9	4.06%	motif file (matrix)	pdf
106		Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	1e-19	-4.455e+01	0.0000	2184.0	2.66%	1764.5	2.18%	motif file (matrix)	pdf
107		FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	1e-19	-4.453e+01	0.0000	5929.0	7.21%	5201.5	6.42%	motif file (matrix)	pdf
108		REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	1e-19	-4.410e+01	0.0000	146.0	0.18%	61.5	0.08%	motif file (matrix)	pdf
109		Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	1e-18	-4.203e+01	0.0000	3172.0	3.86%	2669.0	3.30%	motif file (matrix)	pdf
110		Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	1e-18	-4.184e+01	0.0000	6594.0	8.02%	5844.3	7.22%	motif file (matrix)	pdf
111		Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	1e-18	-4.174e+01	0.0000	14028.0	17.07%	12907.0	15.94%	motif file (matrix)	pdf
112		PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	1e-17	-4.000e+01	0.0000	1784.0	2.17%	1427.8	1.76%	motif file (matrix)	pdf
113		CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	1e-17	-3.924e+01	0.0000	5639.0	6.86%	4970.7	6.14%	motif file (matrix)	pdf
114		RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	1e-17	-3.924e+01	0.0000	5351.0	6.51%	4701.8	5.80%	motif file (matrix)	pdf
115		Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	1e-16	-3.867e+01	0.0000	17807.0	21.67%	16581.0	20.47%	motif file (matrix)	pdf
116		RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	1e-16	-3.798e+01	0.0000	5482.0	6.67%	4833.6	5.97%	motif file (matrix)	pdf
117		Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	1e-16	-3.786e+01	0.0000	1914.0	2.33%	1552.7	1.92%	motif file (matrix)	pdf
118		EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	1e-16	-3.699e+01	0.0000	9931.0	12.08%	9045.2	11.17%	motif file (matrix)	pdf
119		Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	1e-15	-3.552e+01	0.0000	7714.0	9.39%	6955.3	8.59%	motif file (matrix)	pdf
120		YY1(Zf)/Promoter/Homer	1e-15	-3.527e+01	0.0000	811.0	0.99%	595.3	0.73%	motif file (matrix)	pdf
121		STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	1e-15	-3.472e+01	0.0000	2373.0	2.89%	1981.9	2.45%	motif file (matrix)	pdf
122		PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	1e-14	-3.446e+01	0.0000	1497.0	1.82%	1195.1	1.48%	motif file (matrix)	pdf
123		Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	1e-14	-3.424e+01	0.0000	4525.0	5.51%	3968.9	4.90%	motif file (matrix)	pdf
124		ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	1e-14	-3.393e+01	0.0000	8107.0	9.86%	7343.6	9.07%	motif file (matrix)	pdf
125		EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	1e-14	-3.312e+01	0.0000	4773.0	5.81%	4208.7	5.20%	motif file (matrix)	pdf
126		IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	1e-14	-3.290e+01	0.0000	865.0	1.05%	648.0	0.80%	motif file (matrix)	pdf
127		RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	1e-13	-3.014e+01	0.0000	2808.0	3.42%	2405.8	2.97%	motif file (matrix)	pdf
128		Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	1e-13	-2.995e+01	0.0000	1898.0	2.31%	1575.0	1.94%	motif file (matrix)	pdf
129		E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	1e-12	-2.966e+01	0.0000	4755.0	5.79%	4219.2	5.21%	motif file (matrix)	pdf
130		EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	1e-12	-2.961e+01	0.0000	10261.0	12.49%	9443.6	11.66%	motif file (matrix)	pdf
131		Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	1e-12	-2.909e+01	0.0000	3250.0	3.95%	2820.9	3.48%	motif file (matrix)	pdf
132		MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	1e-12	-2.878e+01	0.0000	1845.0	2.24%	1533.2	1.89%	motif file (matrix)	pdf
133		HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	1e-12	-2.815e+01	0.0000	4491.0	5.46%	3984.7	4.92%	motif file (matrix)	pdf
134		Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	1e-12	-2.787e+01	0.0000	6816.0	8.29%	6180.8	7.63%	motif file (matrix)	pdf
135		FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	1e-12	-2.784e+01	0.0000	8715.0	10.60%	7987.9	9.86%	motif file (matrix)	pdf
136		OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	1e-12	-2.777e+01	0.0000	140.0	0.17%	71.3	0.09%	motif file (matrix)	pdf
137		Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	1e-11	-2.744e+01	0.0000	2917.0	3.55%	2524.0	3.12%	motif file (matrix)	pdf
138		TATA-Box(TBP)/Promoter/Homer	1e-11	-2.664e+01	0.0000	8714.0	10.60%	8000.6	9.88%	motif file (matrix)	pdf
139		STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	1e-11	-2.534e+01	0.0000	3663.0	4.46%	3232.9	3.99%	motif file (matrix)	pdf
140		ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	1e-10	-2.479e+01	0.0000	5585.0	6.80%	5045.1	6.23%	motif file (matrix)	pdf
141		Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	1e-10	-2.460e+01	0.0000	9885.0	12.03%	9146.4	11.29%	motif file (matrix)	pdf
142		PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	1e-10	-2.371e+01	0.0000	10705.0	13.03%	9945.2	12.28%	motif file (matrix)	pdf
143		Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	1e-10	-2.368e+01	0.0000	7557.0	9.20%	6931.1	8.56%	motif file (matrix)	pdf
144		Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	1e-10	-2.308e+01	0.0000	1281.0	1.56%	1052.0	1.30%	motif file (matrix)	pdf
145		GFX(?)/Promoter/Homer	1e-9	-2.075e+01	0.0000	160.0	0.19%	94.5	0.12%	motif file (matrix)	pdf
146		KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	1e-8	-2.031e+01	0.0000	19050.0	23.18%	18073.3	22.31%	motif file (matrix)	pdf
147		c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	1e-8	-2.008e+01	0.0000	2706.0	3.29%	2380.2	2.94%	motif file (matrix)	pdf
148		Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	1e-8	-1.995e+01	0.0000	2103.0	2.56%	1821.9	2.25%	motif file (matrix)	pdf
149		PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	1e-8	-1.947e+01	0.0000	1347.0	1.64%	1130.8	1.40%	motif file (matrix)	pdf
150		E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	1e-8	-1.911e+01	0.0000	5640.0	6.86%	5158.0	6.37%	motif file (matrix)	pdf
151		ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	1e-8	-1.889e+01	0.0000	1051.0	1.28%	865.3	1.07%	motif file (matrix)	pdf
152		Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	1e-8	-1.874e+01	0.0000	672.0	0.82%	528.6	0.65%	motif file (matrix)	pdf
153		E2F(E2F)/Hela-CellCycle-Expression/Homer	1e-7	-1.827e+01	0.0000	483.0	0.59%	365.3	0.45%	motif file (matrix)	pdf
154		GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	1e-7	-1.796e+01	0.0000	850.0	1.03%	689.1	0.85%	motif file (matrix)	pdf
155		T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	1e-7	-1.786e+01	0.0000	88.0	0.11%	45.1	0.06%	motif file (matrix)	pdf
156		EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	1e-7	-1.753e+01	0.0000	1817.0	2.21%	1573.1	1.94%	motif file (matrix)	pdf
157		IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	1e-7	-1.631e+01	0.0000	1105.0	1.34%	927.9	1.15%	motif file (matrix)	pdf
158		FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	1e-7	-1.615e+01	0.0000	7051.0	8.58%	6544.4	8.08%	motif file (matrix)	pdf
159		HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	1e-6	-1.595e+01	0.0000	7097.0	8.64%	6591.4	8.14%	motif file (matrix)	pdf
160		Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	1e-6	-1.541e+01	0.0000	3203.0	3.90%	2887.7	3.57%	motif file (matrix)	pdf
161		RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	1e-6	-1.413e+01	0.0000	799.0	0.97%	661.5	0.82%	motif file (matrix)	pdf
162		RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	1e-6	-1.406e+01	0.0000	8958.0	10.90%	8411.6	10.39%	motif file (matrix)	pdf
163		Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	1e-6	-1.402e+01	0.0000	1911.0	2.33%	1686.4	2.08%	motif file (matrix)	pdf
164		Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	1e-6	-1.394e+01	0.0000	1602.0	1.95%	1399.9	1.73%	motif file (matrix)	pdf
165		NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	1e-6	-1.392e+01	0.0000	365.0	0.44%	277.6	0.34%	motif file (matrix)	pdf
166		CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	1e-5	-1.375e+01	0.0000	1944.0	2.37%	1719.6	2.12%	motif file (matrix)	pdf
167		IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	1e-5	-1.365e+01	0.0000	3127.0	3.80%	2833.6	3.50%	motif file (matrix)	pdf
168		STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	1e-5	-1.356e+01	0.0000	1906.0	2.32%	1685.4	2.08%	motif file (matrix)	pdf
169		OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	1e-5	-1.348e+01	0.0000	1095.0	1.33%	934.3	1.15%	motif file (matrix)	pdf
170		Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	1e-5	-1.328e+01	0.0000	1657.0	2.02%	1455.7	1.80%	motif file (matrix)	pdf
171		Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	1e-5	-1.310e+01	0.0000	4233.0	5.15%	3890.7	4.80%	motif file (matrix)	pdf
172		ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	1e-5	-1.301e+01	0.0000	4989.0	6.07%	4613.9	5.70%	motif file (matrix)	pdf
173		CHR(?)/Hela-CellCycle-Expression/Homer	1e-5	-1.271e+01	0.0000	4144.0	5.04%	3810.3	4.70%	motif file (matrix)	pdf
174		ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	1e-5	-1.187e+01	0.0000	1894.0	2.30%	1689.0	2.09%	motif file (matrix)	pdf
175		FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	1e-5	-1.176e+01	0.0000	7321.0	8.91%	6872.1	8.48%	motif file (matrix)	pdf
176		DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	1e-4	-1.078e+01	0.0000	1253.0	1.52%	1098.8	1.36%	motif file (matrix)	pdf
177		ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	1e-4	-1.064e+01	0.0000	514.0	0.63%	421.5	0.52%	motif file (matrix)	pdf
178		Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	1e-4	-1.038e+01	0.0001	2167.0	2.64%	1959.7	2.42%	motif file (matrix)	pdf
179		ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	1e-4	-9.840e+00	0.0001	19025.0	23.15%	18290.7	22.58%	motif file (matrix)	pdf
180		SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	1e-4	-9.726e+00	0.0001	1751.0	2.13%	1574.0	1.94%	motif file (matrix)	pdf
181		PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	1e-4	-9.723e+00	0.0001	3658.0	4.45%	3385.1	4.18%	motif file (matrix)	pdf
182		Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	1e-4	-9.681e+00	0.0001	6361.0	7.74%	5983.7	7.39%	motif file (matrix)	pdf
183		Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	1e-3	-8.602e+00	0.0003	2428.0	2.95%	2226.4	2.75%	motif file (matrix)	pdf
184		ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	1e-3	-8.557e+00	0.0003	2735.0	3.33%	2519.5	3.11%	motif file (matrix)	pdf
185		PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	1e-3	-8.362e+00	0.0004	1908.0	2.32%	1735.9	2.14%	motif file (matrix)	pdf
186		CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	1e-3	-8.224e+00	0.0005	4174.0	5.08%	3902.7	4.82%	motif file (matrix)	pdf
187		NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	1e-3	-8.189e+00	0.0005	1107.0	1.35%	982.0	1.21%	motif file (matrix)	pdf
188		ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	1e-3	-8.166e+00	0.0005	420.0	0.51%	349.0	0.43%	motif file (matrix)	pdf
189		HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	1e-3	-7.913e+00	0.0006	630.0	0.77%	541.8	0.67%	motif file (matrix)	pdf
190		OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	1e-3	-7.582e+00	0.0009	61.0	0.07%	38.2	0.05%	motif file (matrix)	pdf
191		ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	1e-3	-7.462e+00	0.0010	53.0	0.06%	32.5	0.04%	motif file (matrix)	pdf
192		PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	1e-3	-7.227e+00	0.0012	648.0	0.79%	562.8	0.69%	motif file (matrix)	pdf
193		ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	1e-2	-6.773e+00	0.0019	649.0	0.79%	566.5	0.70%	motif file (matrix)	pdf
194		PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	1e-2	-6.439e+00	0.0026	864.0	1.05%	769.7	0.95%	motif file (matrix)	pdf
195		Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	1e-2	-6.396e+00	0.0027	2147.0	2.61%	1986.4	2.45%	motif file (matrix)	pdf
196		DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	1e-2	-6.344e+00	0.0029	1525.0	1.86%	1394.0	1.72%	motif file (matrix)	pdf
197		TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	1e-2	-6.338e+00	0.0029	476.0	0.58%	409.1	0.51%	motif file (matrix)	pdf
198		EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	1e-2	-6.290e+00	0.0030	109.0	0.13%	80.9	0.10%	motif file (matrix)	pdf
199		n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	1e-2	-6.244e+00	0.0031	5517.0	6.71%	5235.7	6.46%	motif file (matrix)	pdf
200		PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	1e-2	-6.185e+00	0.0033	609.0	0.74%	533.3	0.66%	motif file (matrix)	pdf
201		Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	1e-2	-5.777e+00	0.0049	3530.0	4.30%	3324.2	4.10%	motif file (matrix)	pdf
202		Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	1e-2	-5.608e+00	0.0058	6572.0	8.00%	6273.0	7.74%	motif file (matrix)	pdf
203		PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	1e-2	-5.476e+00	0.0066	4015.0	4.89%	3798.2	4.69%	motif file (matrix)	pdf
204		NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	1e-2	-5.006e+00	0.0105	390.0	0.47%	338.6	0.42%	motif file (matrix)	pdf
205		EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	1e-2	-4.972e+00	0.0108	5228.0	6.36%	4984.7	6.15%	motif file (matrix)	pdf
206		FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	1e-2	-4.891e+00	0.0116	3091.0	3.76%	2917.9	3.60%	motif file (matrix)	pdf
207		Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	1e-2	-4.872e+00	0.0118	980.0	1.19%	893.4	1.10%	motif file (matrix)	pdf
208		PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	1e-2	-4.821e+00	0.0124	7153.0	8.70%	6859.7	8.47%	motif file (matrix)	pdf