Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 82161)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 81204)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-6683	-1.539e+04	0.0000	9391.0	11.43%	755.2	0.93%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-4167	-9.596e+03	0.0000	9819.0	11.95%	1662.6	2.05%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-804	-1.853e+03	0.0000	18607.0	22.64%	11869.8	14.65%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-757	-1.743e+03	0.0000	17650.0	21.48%	11252.5	13.89%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-687	-1.583e+03	0.0000	10323.0	12.56%	5701.5	7.04%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-684	-1.577e+03	0.0000	10068.0	12.25%	5518.0	6.81%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-612	-1.411e+03	0.0000	16584.0	20.18%	10914.2	13.48%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-588	-1.355e+03	0.0000	9771.0	11.89%	5561.7	6.87%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-484	-1.116e+03	0.0000	12089.0	14.71%	7724.7	9.54%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-318	-7.338e+02	0.0000	14285.0	17.38%	10312.3	12.73%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-293	-6.761e+02	0.0000	43761.0	53.25%	37953.0	46.86%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-285	-6.565e+02	0.0000	12229.0	14.88%	8728.4	10.78%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-284	-6.555e+02	0.0000	11553.0	14.06%	8155.8	10.07%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-257	-5.940e+02	0.0000	18279.0	22.24%	14205.1	17.54%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-245	-5.661e+02	0.0000	12452.0	15.15%	9139.7	11.28%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-224	-5.164e+02	0.0000	9274.0	11.28%	6541.1	8.08%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-190	-4.378e+02	0.0000	29152.0	35.47%	24842.7	30.67%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-186	-4.295e+02	0.0000	11925.0	14.51%	9052.1	11.18%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-178	-4.113e+02	0.0000	9536.0	11.60%	7023.0	8.67%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-177	-4.096e+02	0.0000	5055.0	6.15%	3279.6	4.05%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-176	-4.071e+02	0.0000	8066.0	9.81%	5776.8	7.13%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-159	-3.672e+02	0.0000	18462.0	22.46%	15154.5	18.71%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-122	-2.817e+02	0.0000	7123.0	8.67%	5297.7	6.54%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-121	-2.788e+02	0.0000	4537.0	5.52%	3117.1	3.85%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-116	-2.681e+02	0.0000	4982.0	6.06%	3511.2	4.34%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-114	-2.634e+02	0.0000	17243.0	20.98%	14475.2	17.87%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-108	-2.491e+02	0.0000	14499.0	17.64%	12011.0	14.83%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-107	-2.477e+02	0.0000	4795.0	5.83%	3403.4	4.20%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-102	-2.370e+02	0.0000	5368.0	6.53%	3916.0	4.83%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-102	-2.367e+02	0.0000	34166.0	41.57%	30697.6	37.90%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-99	-2.293e+02	0.0000	2838.0	3.45%	1836.5	2.27%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-99	-2.283e+02	0.0000	5200.0	6.33%	3795.8	4.69%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-94	-2.176e+02	0.0000	6012.0	7.32%	4524.0	5.59%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-92	-2.123e+02	0.0000	18243.0	22.20%	15660.7	19.34%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-92	-2.122e+02	0.0000	25457.0	30.98%	22477.3	27.75%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-90	-2.078e+02	0.0000	2093.0	2.55%	1287.9	1.59%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-85	-1.978e+02	0.0000	25753.0	31.34%	22849.8	28.21%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-83	-1.930e+02	0.0000	5711.0	6.95%	4337.9	5.36%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-80	-1.848e+02	0.0000	12126.0	14.75%	10129.3	12.51%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-79	-1.840e+02	0.0000	16183.0	19.69%	13889.5	17.15%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-77	-1.795e+02	0.0000	287.0	0.35%	73.2	0.09%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-77	-1.790e+02	0.0000	6306.0	7.67%	4905.0	6.06%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-75	-1.739e+02	0.0000	1749.0	2.13%	1075.5	1.33%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-74	-1.725e+02	0.0000	12556.0	15.28%	10585.2	13.07%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-73	-1.704e+02	0.0000	6979.0	8.49%	5531.0	6.83%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-73	-1.684e+02	0.0000	5193.0	6.32%	3964.4	4.89%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-69	-1.608e+02	0.0000	5679.0	6.91%	4415.2	5.45%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-68	-1.580e+02	0.0000	869.0	1.06%	443.2	0.55%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-65	-1.510e+02	0.0000	936.0	1.14%	498.8	0.62%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-61	-1.419e+02	0.0000	32618.0	39.69%	29868.7	36.88%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-60	-1.388e+02	0.0000	7743.0	9.42%	6346.3	7.84%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-59	-1.359e+02	0.0000	7028.0	8.55%	5713.8	7.05%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-59	-1.359e+02	0.0000	3291.0	4.00%	2421.9	2.99%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-54	-1.264e+02	0.0000	7844.0	9.54%	6495.9	8.02%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-54	-1.246e+02	0.0000	10189.0	12.40%	8653.2	10.68%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-51	-1.196e+02	0.0000	2100.0	2.56%	1461.9	1.80%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-51	-1.186e+02	0.0000	857.0	1.04%	480.2	0.59%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-51	-1.177e+02	0.0000	3280.0	3.99%	2465.0	3.04%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-50	-1.158e+02	0.0000	689.0	0.84%	362.3	0.45%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-48	-1.128e+02	0.0000	5949.0	7.24%	4842.2	5.98%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-48	-1.124e+02	0.0000	543.0	0.66%	264.9	0.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-48	-1.113e+02	0.0000	14696.0	17.88%	12940.3	15.98%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-48	-1.112e+02	0.0000	19063.0	23.20%	17076.8	21.08%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-48	-1.110e+02	0.0000	504.0	0.61%	239.9	0.30%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-47	-1.094e+02	0.0000	5107.0	6.21%	4101.7	5.06%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-45	-1.057e+02	0.0000	965.0	1.17%	579.1	0.71%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-44	-1.014e+02	0.0000	14793.0	18.00%	13102.3	16.18%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-42	-9.683e+01	0.0000	1783.0	2.17%	1252.4	1.55%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-41	-9.612e+01	0.0000	565.0	0.69%	296.5	0.37%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-40	-9.251e+01	0.0000	1921.0	2.34%	1378.7	1.70%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-39	-9.033e+01	0.0000	1218.0	1.48%	804.1	0.99%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-38	-8.777e+01	0.0000	4327.0	5.26%	3494.9	4.31%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-37	-8.702e+01	0.0000	7215.0	8.78%	6122.9	7.56%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-34	-7.944e+01	0.0000	793.0	0.96%	488.2	0.60%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-33	-7.777e+01	0.0000	13091.0	15.93%	11674.5	14.41%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-32	-7.579e+01	0.0000	7883.0	9.59%	6806.6	8.40%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-30	-7.100e+01	0.0000	2095.0	2.55%	1589.0	1.96%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-30	-7.066e+01	0.0000	4052.0	4.93%	3323.7	4.10%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-30	-7.000e+01	0.0000	11846.0	14.41%	10560.7	13.04%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-30	-6.945e+01	0.0000	1849.0	2.25%	1381.6	1.71%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-29	-6.722e+01	0.0000	769.0	0.94%	490.6	0.61%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-29	-6.714e+01	0.0000	5473.0	6.66%	4635.0	5.72%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-28	-6.534e+01	0.0000	4366.0	5.31%	3633.3	4.49%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-27	-6.443e+01	0.0000	6914.0	8.41%	5980.4	7.38%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-27	-6.411e+01	0.0000	13968.0	17.00%	12622.4	15.58%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-27	-6.323e+01	0.0000	2671.0	3.25%	2120.0	2.62%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-27	-6.304e+01	0.0000	8966.0	10.91%	7904.5	9.76%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-27	-6.254e+01	0.0000	2975.0	3.62%	2393.2	2.95%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-26	-6.035e+01	0.0000	1127.0	1.37%	795.8	0.98%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-26	-6.033e+01	0.0000	13885.0	16.89%	12578.5	15.53%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-24	-5.736e+01	0.0000	7483.0	9.11%	6558.8	8.10%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-24	-5.730e+01	0.0000	1878.0	2.29%	1445.1	1.78%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-24	-5.555e+01	0.0000	7874.0	9.58%	6937.9	8.57%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-23	-5.399e+01	0.0000	11991.0	14.59%	10836.5	13.38%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-23	-5.393e+01	0.0000	11763.0	14.31%	10620.3	13.11%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-23	-5.340e+01	0.0000	1972.0	2.40%	1541.8	1.90%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-22	-5.272e+01	0.0000	2910.0	3.54%	2378.6	2.94%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-22	-5.135e+01	0.0000	1173.0	1.43%	858.0	1.06%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-22	-5.114e+01	0.0000	13534.0	16.47%	12333.2	15.23%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-21	-4.978e+01	0.0000	3818.0	4.65%	3216.7	3.97%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-21	-4.900e+01	0.0000	6173.0	7.51%	5396.8	6.66%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-21	-4.895e+01	0.0000	8115.0	9.87%	7215.6	8.91%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-20	-4.723e+01	0.0000	5226.0	6.36%	4529.0	5.59%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-20	-4.656e+01	0.0000	7740.0	9.42%	6882.6	8.50%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-19	-4.497e+01	0.0000	3870.0	4.71%	3291.9	4.06%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-19	-4.455e+01	0.0000	2184.0	2.66%	1764.5	2.18%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-19	-4.453e+01	0.0000	5929.0	7.21%	5201.5	6.42%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-19	-4.410e+01	0.0000	146.0	0.18%	61.5	0.08%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-18	-4.203e+01	0.0000	3172.0	3.86%	2669.0	3.30%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-18	-4.184e+01	0.0000	6594.0	8.02%	5844.3	7.22%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-18	-4.174e+01	0.0000	14028.0	17.07%	12907.0	15.94%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-17	-4.000e+01	0.0000	1784.0	2.17%	1427.8	1.76%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-17	-3.924e+01	0.0000	5639.0	6.86%	4970.7	6.14%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-17	-3.924e+01	0.0000	5351.0	6.51%	4701.8	5.80%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-16	-3.867e+01	0.0000	17807.0	21.67%	16581.0	20.47%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-16	-3.798e+01	0.0000	5482.0	6.67%	4833.6	5.97%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-16	-3.786e+01	0.0000	1914.0	2.33%	1552.7	1.92%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-16	-3.699e+01	0.0000	9931.0	12.08%	9045.2	11.17%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-15	-3.552e+01	0.0000	7714.0	9.39%	6955.3	8.59%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-15	-3.527e+01	0.0000	811.0	0.99%	595.3	0.73%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-15	-3.472e+01	0.0000	2373.0	2.89%	1981.9	2.45%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-14	-3.446e+01	0.0000	1497.0	1.82%	1195.1	1.48%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-14	-3.424e+01	0.0000	4525.0	5.51%	3968.9	4.90%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-14	-3.393e+01	0.0000	8107.0	9.86%	7343.6	9.07%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-14	-3.312e+01	0.0000	4773.0	5.81%	4208.7	5.20%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-14	-3.290e+01	0.0000	865.0	1.05%	648.0	0.80%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-13	-3.014e+01	0.0000	2808.0	3.42%	2405.8	2.97%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-13	-2.995e+01	0.0000	1898.0	2.31%	1575.0	1.94%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-12	-2.966e+01	0.0000	4755.0	5.79%	4219.2	5.21%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-12	-2.961e+01	0.0000	10261.0	12.49%	9443.6	11.66%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-12	-2.909e+01	0.0000	3250.0	3.95%	2820.9	3.48%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-12	-2.878e+01	0.0000	1845.0	2.24%	1533.2	1.89%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-12	-2.815e+01	0.0000	4491.0	5.46%	3984.7	4.92%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-12	-2.787e+01	0.0000	6816.0	8.29%	6180.8	7.63%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-12	-2.784e+01	0.0000	8715.0	10.60%	7987.9	9.86%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-12	-2.777e+01	0.0000	140.0	0.17%	71.3	0.09%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-11	-2.744e+01	0.0000	2917.0	3.55%	2524.0	3.12%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-11	-2.664e+01	0.0000	8714.0	10.60%	8000.6	9.88%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-11	-2.534e+01	0.0000	3663.0	4.46%	3232.9	3.99%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-10	-2.479e+01	0.0000	5585.0	6.80%	5045.1	6.23%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-10	-2.460e+01	0.0000	9885.0	12.03%	9146.4	11.29%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-10	-2.371e+01	0.0000	10705.0	13.03%	9945.2	12.28%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-10	-2.368e+01	0.0000	7557.0	9.20%	6931.1	8.56%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-10	-2.308e+01	0.0000	1281.0	1.56%	1052.0	1.30%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-9	-2.075e+01	0.0000	160.0	0.19%	94.5	0.12%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-8	-2.031e+01	0.0000	19050.0	23.18%	18073.3	22.31%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-8	-2.008e+01	0.0000	2706.0	3.29%	2380.2	2.94%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-8	-1.995e+01	0.0000	2103.0	2.56%	1821.9	2.25%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-8	-1.947e+01	0.0000	1347.0	1.64%	1130.8	1.40%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-8	-1.911e+01	0.0000	5640.0	6.86%	5158.0	6.37%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-8	-1.889e+01	0.0000	1051.0	1.28%	865.3	1.07%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-8	-1.874e+01	0.0000	672.0	0.82%	528.6	0.65%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-7	-1.827e+01	0.0000	483.0	0.59%	365.3	0.45%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-7	-1.796e+01	0.0000	850.0	1.03%	689.1	0.85%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-7	-1.786e+01	0.0000	88.0	0.11%	45.1	0.06%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-7	-1.753e+01	0.0000	1817.0	2.21%	1573.1	1.94%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-7	-1.631e+01	0.0000	1105.0	1.34%	927.9	1.15%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-7	-1.615e+01	0.0000	7051.0	8.58%	6544.4	8.08%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-6	-1.595e+01	0.0000	7097.0	8.64%	6591.4	8.14%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-6	-1.541e+01	0.0000	3203.0	3.90%	2887.7	3.57%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-6	-1.413e+01	0.0000	799.0	0.97%	661.5	0.82%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-6	-1.406e+01	0.0000	8958.0	10.90%	8411.6	10.39%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-6	-1.402e+01	0.0000	1911.0	2.33%	1686.4	2.08%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-6	-1.394e+01	0.0000	1602.0	1.95%	1399.9	1.73%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.392e+01	0.0000	365.0	0.44%	277.6	0.34%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-5	-1.375e+01	0.0000	1944.0	2.37%	1719.6	2.12%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-5	-1.365e+01	0.0000	3127.0	3.80%	2833.6	3.50%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-5	-1.356e+01	0.0000	1906.0	2.32%	1685.4	2.08%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-5	-1.348e+01	0.0000	1095.0	1.33%	934.3	1.15%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-5	-1.328e+01	0.0000	1657.0	2.02%	1455.7	1.80%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-5	-1.310e+01	0.0000	4233.0	5.15%	3890.7	4.80%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-5	-1.301e+01	0.0000	4989.0	6.07%	4613.9	5.70%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-5	-1.271e+01	0.0000	4144.0	5.04%	3810.3	4.70%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-5	-1.187e+01	0.0000	1894.0	2.30%	1689.0	2.09%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-5	-1.176e+01	0.0000	7321.0	8.91%	6872.1	8.48%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-4	-1.078e+01	0.0000	1253.0	1.52%	1098.8	1.36%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-4	-1.064e+01	0.0000	514.0	0.63%	421.5	0.52%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-4	-1.038e+01	0.0001	2167.0	2.64%	1959.7	2.42%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-4	-9.840e+00	0.0001	19025.0	23.15%	18290.7	22.58%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-4	-9.726e+00	0.0001	1751.0	2.13%	1574.0	1.94%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-9.723e+00	0.0001	3658.0	4.45%	3385.1	4.18%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-4	-9.681e+00	0.0001	6361.0	7.74%	5983.7	7.39%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-3	-8.602e+00	0.0003	2428.0	2.95%	2226.4	2.75%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-3	-8.557e+00	0.0003	2735.0	3.33%	2519.5	3.11%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-8.362e+00	0.0004	1908.0	2.32%	1735.9	2.14%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-3	-8.224e+00	0.0005	4174.0	5.08%	3902.7	4.82%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-8.189e+00	0.0005	1107.0	1.35%	982.0	1.21%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-3	-8.166e+00	0.0005	420.0	0.51%	349.0	0.43%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-3	-7.913e+00	0.0006	630.0	0.77%	541.8	0.67%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-3	-7.582e+00	0.0009	61.0	0.07%	38.2	0.05%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-3	-7.462e+00	0.0010	53.0	0.06%	32.5	0.04%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-3	-7.227e+00	0.0012	648.0	0.79%	562.8	0.69%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-6.773e+00	0.0019	649.0	0.79%	566.5	0.70%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-6.439e+00	0.0026	864.0	1.05%	769.7	0.95%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-6.396e+00	0.0027	2147.0	2.61%	1986.4	2.45%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-2	-6.344e+00	0.0029	1525.0	1.86%	1394.0	1.72%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-6.338e+00	0.0029	476.0	0.58%	409.1	0.51%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.290e+00	0.0030	109.0	0.13%	80.9	0.10%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.244e+00	0.0031	5517.0	6.71%	5235.7	6.46%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-6.185e+00	0.0033	609.0	0.74%	533.3	0.66%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-5.777e+00	0.0049	3530.0	4.30%	3324.2	4.10%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-2	-5.608e+00	0.0058	6572.0	8.00%	6273.0	7.74%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-5.476e+00	0.0066	4015.0	4.89%	3798.2	4.69%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.006e+00	0.0105	390.0	0.47%	338.6	0.42%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-4.972e+00	0.0108	5228.0	6.36%	4984.7	6.15%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-4.891e+00	0.0116	3091.0	3.76%	2917.9	3.60%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-4.872e+00	0.0118	980.0	1.19%	893.4	1.10%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-4.821e+00	0.0124	7153.0	8.70%	6859.7	8.47%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-4.553e+00	0.0161	760.0	0.92%	688.7	0.85%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-4.321e+00	0.0202	5032.0	6.12%	4810.4	5.94%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-4.144e+00	0.0240	5126.0	6.24%	4906.7	6.06%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-3.777e+00	0.0344	3948.0	4.80%	3771.3	4.66%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.637e+00	0.0394	1148.0	1.40%	1068.2	1.32%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.416e+00	0.0489	13708.0	16.68%	13316.9	16.44%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.065e+00	0.0692	2563.0	3.12%	2444.2	3.02%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.723e+00	0.0970	9906.0	12.05%	9624.5	11.88%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.714e+00	0.0974	524.0	0.64%	483.7	0.60%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.530e+00	0.1165	3669.0	4.46%	3534.5	4.36%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.426e+00	0.1287	2817.0	3.43%	2707.2	3.34%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.398e+00	0.1319	3118.0	3.79%	3001.9	3.71%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.369e+00	0.1350	1423.0	1.73%	1354.1	1.67%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.224e+00	0.1554	3007.0	3.66%	2898.4	3.58%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.121e+00	0.1715	1069.0	1.30%	1016.5	1.25%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.019e+00	0.1890	1798.0	2.19%	1726.5	2.13%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.827e+00	0.2280	10849.0	13.20%	10597.0	13.08%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.650e+00	0.2712	373.0	0.45%	351.7	0.43%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.471e+00	0.3228	718.0	0.87%	688.7	0.85%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.316e+00	0.3752	965.0	1.17%	932.5	1.15%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.175e+00	0.4303	85.0	0.10%	79.4	0.10%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.116e+00	0.4544	6414.0	7.80%	6287.9	7.76%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.258e-01	0.5472	13867.0	16.87%	13638.3	16.84%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.924e-01	0.5633	26007.0	31.64%	25600.4	31.61%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-8.129e-01	0.6073	5044.0	6.14%	4961.7	6.13%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.501e-01	0.6439	683.0	0.83%	671.9	0.83%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-6.565e-01	0.7040	155.0	0.19%	153.6	0.19%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.019e-01	0.7404	3635.0	4.42%	3589.1	4.43%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.703e-01	0.7610	2147.0	2.61%	2123.6	2.62%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.025e-01	0.8962	4115.0	5.01%	4082.6	5.04%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.956e-01	0.8987	158.0	0.19%	161.6	0.20%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.543e-01	0.9326	2731.0	3.32%	2718.7	3.36%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.511e-01	0.9326	1898.0	2.31%	1893.1	2.34%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.119e-01	0.9650	1265.0	1.54%	1268.2	1.57%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.576e-01	1.0000	111.0	0.14%	117.5	0.15%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.502e-01	1.0000	4818.0	5.86%	4799.2	5.93%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.303e-01	1.0000	4330.0	5.27%	4319.2	5.33%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.585e-01	1.0000	409.0	0.50%	424.7	0.52%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.576e-01	1.0000	650.0	0.79%	667.8	0.82%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.488e-01	1.0000	899.0	1.09%	918.2	1.13%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.431e-01	1.0000	588.0	0.72%	606.7	0.75%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.431e-01	1.0000	588.0	0.72%	606.7	0.75%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.092e-01	1.0000	1376.0	1.67%	1402.2	1.73%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.069e-01	1.0000	3051.0	3.71%	3075.3	3.80%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.975e-02	1.0000	8242.0	10.03%	8234.1	10.17%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.693e-02	1.0000	1963.0	2.39%	1992.5	2.46%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.787e-02	1.0000	2472.0	3.01%	2506.9	3.10%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.670e-02	1.0000	3841.0	4.67%	3872.6	4.78%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.350e-02	1.0000	3132.0	3.81%	3175.9	3.92%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.670e-02	1.0000	5512.0	6.71%	5552.9	6.86%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.237e-02	1.0000	2271.0	2.76%	2319.0	2.86%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.695e-02	1.0000	1393.0	1.69%	1439.7	1.78%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.238e-02	1.0000	6889.0	8.38%	6936.0	8.56%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.040e-02	1.0000	2268.0	2.76%	2323.1	2.87%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.986e-02	1.0000	18725.0	22.78%	18678.5	23.06%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.541e-02	1.0000	587.0	0.71%	626.7	0.77%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.150e-02	1.0000	1256.0	1.53%	1318.9	1.63%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.710e-03	1.0000	2545.0	3.10%	2626.2	3.24%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.660e-03	1.0000	806.0	0.98%	871.4	1.08%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.475e-03	1.0000	1830.0	2.23%	1919.0	2.37%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.244e-03	1.0000	366.0	0.45%	415.0	0.51%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.813e-03	1.0000	574.0	0.70%	633.1	0.78%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.550e-04	1.0000	154.0	0.19%	194.0	0.24%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.660e-04	1.0000	438.0	0.53%	503.9	0.62%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.750e-04	1.0000	1194.0	1.45%	1297.1	1.60%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.170e-04	1.0000	3107.0	3.78%	3255.7	4.02%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.920e-04	1.0000	154.0	0.19%	199.7	0.25%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.170e-04	1.0000	126.0	0.15%	169.3	0.21%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-4.700e-05	1.0000	3481.0	4.24%	3657.4	4.52%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.200e-05	1.0000	3419.0	4.16%	3613.3	4.46%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.000e-06	1.0000	5072.0	6.17%	5295.4	6.54%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.000e-06	1.0000	409.0	0.50%	495.3	0.61%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.000e-06	1.0000	439.0	0.53%	528.1	0.65%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.000e-06	1.0000	964.0	1.17%	1092.8	1.35%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.000e-06	1.0000	2311.0	2.81%	2493.0	3.08%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.000e-06	1.0000	1022.0	1.24%	1154.7	1.43%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.000e-06	1.0000	3695.0	4.50%	3918.9	4.84%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	11.0	0.01%	35.9	0.04%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	8088.0	9.84%	8430.9	10.41%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	5251.0	6.39%	5560.5	6.87%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-0.000e+00	1.0000	1223.0	1.49%	1407.1	1.74%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	134.0	0.16%	212.1	0.26%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	4672.0	5.68%	5016.6	6.19%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	19226.0	23.39%	19751.2	24.39%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	1385.0	1.69%	1656.0	2.04%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	15201.0	18.50%	15845.2	19.56%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	644.0	0.78%	848.9	1.05%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	3986.0	4.85%	4432.9	5.47%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	18299.0	22.27%	22279.1	27.51%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	17634.0	21.46%	20705.0	25.56%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	14981.0	18.23%	15919.6	19.65%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	9528.0	11.59%	15044.9	18.57%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	5781.0	7.03%	6679.4	8.25%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	8740.0	10.63%	13211.0	16.31%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	469.0	0.57%	1391.6	1.72%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	3199.0	3.89%	5000.5	6.17%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	6007.0	7.31%	7768.4	9.59%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	3184.0	3.87%	5452.8	6.73%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	23442.0	28.52%	25303.2	31.24%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	16876.0	20.53%	18845.6	23.27%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	18370.0	22.35%	19800.3	24.45%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	18379.0	22.36%	20084.4	24.80%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	8258.0	10.05%	9030.4	11.15%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	32748.0	39.85%	34421.7	42.50%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	1747.0	2.13%	2128.1	2.63%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	1202.0	1.46%	1623.2	2.00%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	6921.0	8.42%	7928.7	9.79%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	26305.0	32.01%	28863.2	35.64%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	3474.0	4.23%	4603.1	5.68%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	560.0	0.68%	825.8	1.02%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	13465.0	16.38%	14558.0	17.97%