# Parameters
data_name = "Tbr1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:41:16,599 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Tbr1: Motif: M01028_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tbr1: #2

Cell type	Modisco	Homer
T_LCMV;CD8+;D8;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.00033322	Pattern: motif19.motif Significance: 0.00528615
NK_SPLND;A;CL	Pattern: metacluster_0/pattern_15 Significance: 0.000653306	Pattern: motif14.motif Significance: 0.0374494

Unique Cell types only TF-MoDISco finds Tbr1: #2

Cell type	Modisco	Homer
TEff_SPLND;CD8+;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.00025189200000000003	Absent
ePyramidal_NRN;A;GEO	Pattern: metacluster_1/pattern_15 Significance: 0.00529745	Absent

Unique Cell types only Homer finds Tbr1: #2

Cell type	Modisco	Homer
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO	Absent	Pattern: motif8.motif Significance: 0.000151116
ENDRM_ESD;A;GEO	Absent	Pattern: motif15.motif Significance: 0.044062