# Parameters
data_name = "Pax5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:27:18,583 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Pax5: Motif: M09342_2.00

Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Pax5

Unique Cell types only TF-MoDISco finds Pax5: #12

Cell type	Modisco	Homer
preB;A;CL	Pattern: metacluster_1/pattern_19 Significance: 2.96369e-07 / Pattern: metacluster_1/pattern_20 Significance: 1.50796e-07	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_24 Significance: 0.0174623	Absent
aB;A;GEO	Pattern: metacluster_1/pattern_23 Significance: 8.06796e-06 / Pattern: metacluster_1/pattern_25 Significance: 7.93124e-05	Absent
CRBL_GRNL_Precrsr;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00817727	Absent
GC_B;A;CL	Pattern: metacluster_1/pattern_8 Significance: 7.2395e-08	Absent
preB_BMD;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 2.99063e-07	Absent
B;B220_CD43;A;GEO	Pattern: metacluster_1/pattern_19 Significance: 9.763299999999999e-09	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_18 Significance: 0.00876139	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_11 Significance: 0.0230935	Absent
aB_LPS+IL4+Oligomycin_24h;A;CL	Pattern: metacluster_1/pattern_24 Significance: 0.00014212100000000002	Absent
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_29 Significance: 3.5767e-05	Absent
KDNY;8wks;D;En	Pattern: metacluster_1/pattern_16 Significance: 1.59737e-07 / Pattern: metacluster_1/pattern_18 Significance: 1.96643e-05	Absent

No Cell types only Homer finds Pax5