# Parameters
data_name = "Nr1d1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:53,372 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Nr1d1: Motif: M09310_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nr1d1: #5

Cell type	Modisco	Homer
RTN;D1;D;En	Pattern: metacluster_0/pattern_10 Significance: 0.00470587	Pattern: motif8.motif Significance: 0.013608000000000002
ILC3;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.030862200000000003	Pattern: motif10.motif Significance: 0.0422098
iPV_NRN;A;GEO	Pattern: metacluster_1/pattern_8 Significance: 0.03764869999999999	Pattern: motif10.motif Significance: 0.00307812
ILC3_AbxGRMFree;A;GEO	Pattern: metacluster_1/pattern_6 Significance: 0.038449199999999996	Pattern: motif8.motif Significance: 0.00654607
NCR+ILC3;A;CL	Pattern: metacluster_1/pattern_4 Significance: 0.0243363	Pattern: motif5.motif Significance: 0.010957600000000001

Unique Cell types only TF-MoDISco finds Nr1d1: #10

Cell type	Modisco	Homer
RTN;A;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.045864499999999996	Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En	Pattern: metacluster_1/pattern_9 Significance: 0.019532499999999998	Absent
ILC1;A;GEO	Pattern: metacluster_1/pattern_14 Significance: 0.0208454	Absent
MCRPHG;A;CL	Pattern: metacluster_1/pattern_13 Significance: 0.042746	Absent
DP;A;CL	Pattern: metacluster_1/pattern_16 Significance: 0.00898819	Absent
WHL_BRN;8wks;D;GEO	Pattern: metacluster_1/pattern_20 Significance: 0.00190688	Absent
NCR+ILC3+IL23;A;CL	Pattern: metacluster_1/pattern_9 Significance: 0.029620799999999996 / Pattern: metacluster_1/pattern_19 Significance: 0.0421796	Absent
Corticotrope;A;GEO	Pattern: metacluster_0/pattern_20 Significance: 0.00341993	Absent
WHL_BRN;8wks;D;En	Pattern: metacluster_1/pattern_16 Significance: 0.00593375	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.018619999999999998	Absent

No Cell types only Homer finds Nr1d1