In [1]:
# Parameters
data_name = "Nkx3-1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:24:47,288 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nkx3-1: Motif: M00170_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nkx3-1: #2

Cell typeModiscoHomer
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.036291699999999996

Pattern: motif9.motif

Significance: 0.0540575

LNG;8wks;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.022597299999999997

Pattern: motif4.motif

Significance: 0.017878900000000003

Unique Cell types only TF-MoDISco finds Nkx3-1: #14

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0159278

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.013364500000000001

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0183889

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.034239599999999995

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.032468000000000004

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.0407593

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.036176099999999996

Absent
LNG;P0;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.017012299999999998

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0592639

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0569076

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0426085

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.027333099999999996

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.051546400000000006

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.023600299999999998

Absent
Unique Cell types only Homer finds Nkx3-1: #1

Cell typeModiscoHomer
Muller;P12;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0486449