# Parameters
data_name = "Hoxd13"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:43,164 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxd13: Motif: M03248_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxd13: #8

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.037222399999999996 / Pattern: metacluster_0/pattern_5 Significance: 0.00127404	Pattern: motif8.motif Significance: 0.0093931
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0100435 / Pattern: metacluster_1/pattern_13 Significance: 0.0144624	Pattern: motif11.motif Significance: 0.05921509999999999
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.00885692 / Pattern: metacluster_0/pattern_3 Significance: 0.0143451	Pattern: motif5.motif Significance: 0.015047999999999999
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0389176	Pattern: motif4.motif Significance: 0.013079399999999998
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.0317646	Pattern: motif2.motif Significance: 0.0463649
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.0265274	Pattern: motif15.motif Significance: 0.0436849
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.00768769	Pattern: motif3.motif Significance: 0.00857679
KDNY;P0;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0446049	Pattern: motif4.motif Significance: 0.021657

Unique Cell types only TF-MoDISco finds Hoxd13: #11

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.00892313	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0199543	Absent
BCK_SKN;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0276435	Absent
RTN;D1;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.041076800000000004	Absent
wES;RTN;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0410526	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.00510244	Absent
wES;WHL_BRN;E14.5;D;GEO	Pattern: metacluster_0/pattern_0 Significance: 0.028302099999999997	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.0238252	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0430723	Absent
Hnd_BRN;P0;D;En	Pattern: metacluster_1/pattern_6 Significance: 0.0220699	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.020958400000000002	Absent

Unique Cell types only Homer finds Hoxd13: #1

Cell type	Modisco	Homer
Md_BRN;D;En	Absent	Pattern: motif14.motif Significance: 0.059194000000000004