In [1]:
# Parameters
data_name = "Hoxa4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:15,359 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxa4: Motif: M00383_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa4: #11

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00517253

Pattern: motif8.motif

Significance: 0.0346987

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0234037

Pattern: motif9.motif

Significance: 0.0431676

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0161967

Pattern: motif2.motif

Significance: 0.043956300000000004

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.017248

Pattern: motif3.motif

Significance: 0.047715

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0359829

Pattern: motif3.motif

Significance: 0.058125300000000005

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00531875

Pattern: motif13.motif

Significance: 0.0489155

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0293585

Pattern: motif4.motif

Significance: 0.027358799999999996

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.015282599999999999

Pattern: motif2.motif

Significance: 0.0579871

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0168272

Pattern: motif2.motif

Significance: 0.0503892

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0557548

Pattern: motif3.motif

Significance: 0.0216013

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00881382

Pattern: motif14.motif

Significance: 0.0445302

Unique Cell types only TF-MoDISco finds Hoxa4: #18

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.054785

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0493667

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00646239

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00533454

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.038649699999999995

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.026329200000000004

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.026512400000000002

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00148367

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0102396

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.033007199999999993

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 3.48323e-05

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.025271000000000002

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0399621

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.045549099999999995

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0133363

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0267339

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.047448199999999996

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0582602

Absent
Unique Cell types only Homer finds Hoxa4: #3

Cell typeModiscoHomer
KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0206842

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0538827

LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0449486