In [1]:
# Parameters
data_name = "Hoxa10"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:11:50,701 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxa10: Motif: M09170_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa10: #9

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00656218

/

Pattern: metacluster_0/pattern_5

Significance: 0.0061722

Pattern: motif8.motif

Significance: 8.4795e-05

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.04147530000000001

/

Pattern: metacluster_0/pattern_3

Significance: 0.010714399999999999

Pattern: motif5.motif

Significance: 0.00260755

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0105451

Pattern: motif4.motif

Significance: 0.000238961

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0406655

Pattern: motif9.motif

Significance: 0.048230300000000004

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_0

Significance: 0.016445500000000002

/

Pattern: metacluster_0/pattern_5

Significance: 0.00884747

Pattern: motif2.motif

Significance: 0.0398798

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.027220299999999996

Pattern: motif15.motif

Significance: 0.0432219

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.00768769

Pattern: motif3.motif

Significance: 0.000456372

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0218092

Pattern: motif14.motif

Significance: 0.0445302

KDNY;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.021902

Pattern: motif4.motif

Significance: 0.05674490000000001

Unique Cell types only TF-MoDISco finds Hoxa10: #15

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.026912799999999997

Absent
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.056537699999999996

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.039763099999999996

/

Pattern: metacluster_1/pattern_13

Significance: 0.0122051

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00448177

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0321088

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0218311

Absent
AML;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.0282623

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.0157202

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0503588

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.00414328

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.03579280000000001

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.029985500000000002

Absent
Adrenal;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.00660244

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0241353

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.029418200000000002

Absent
Unique Cell types only Homer finds Hoxa10: #2

Cell typeModiscoHomer
G_NRN_P;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.0565193

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0515615