In [1]:
# Parameters
data_name = "Hlx"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:11:28,494 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hlx: Motif: M00485_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hlx: #9

Cell typeModiscoHomer
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00675969

Pattern: motif3.motif

Significance: 0.044849400000000005

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0122423

Pattern: motif9.motif

Significance: 0.0463926

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.010661499999999999

Pattern: motif2.motif

Significance: 0.0530543

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00781463

Pattern: motif13.motif

Significance: 0.048193400000000004

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.014593700000000001

Pattern: motif4.motif

Significance: 0.0366901

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.014027700000000002

Pattern: motif2.motif

Significance: 0.0476283

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0157063

Pattern: motif3.motif

Significance: 0.0161112

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0116191

Pattern: motif14.motif

Significance: 0.0246264

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00968653

Pattern: motif2.motif

Significance: 0.0564302

Unique Cell types only TF-MoDISco finds Hlx: #17

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0593315

/

Pattern: metacluster_0/pattern_25

Significance: 0.00922388

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00787891

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00683809

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0295186

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0123251

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00441011

Absent
CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0141595

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0126645

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.013349399999999999

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0102555

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.029966900000000005

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0146909

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.059325800000000005

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0116699

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.01487

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.012157

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0113124

Absent
Unique Cell types only Homer finds Hlx: #1

Cell typeModiscoHomer
Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0400487