# Parameters
data_name = "Cdx4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 10:59:55,871 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Cdx4: Motif: M09197_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Cdx4: #12

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_9 Significance: 0.00213971	Pattern: motif4.motif Significance: 0.022191
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.000230915	Pattern: motif8.motif Significance: 1.79271e-05
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 3.5055199999999994e-06	Pattern: motif5.motif Significance: 0.00159505
wES;posterior;1;E8.5;A;GEO	Pattern: metacluster_0/pattern_11 Significance: 0.00238713	Pattern: motif6.motif Significance: 0.0113036
npES;posterior_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_5 Significance: 8.02276e-05	Pattern: motif5.motif Significance: 0.00288029
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_7 Significance: 0.00175155	Pattern: motif7.motif Significance: 0.0342317
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.0137773	Pattern: motif4.motif Significance: 0.03346969999999999
Adipose;D;En	Pattern: metacluster_0/pattern_22 Significance: 1.7924800000000002e-07	Pattern: motif17.motif Significance: 0.0487625
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_0 Significance: 7.88693e-08	Pattern: motif2.motif Significance: 2.71629e-05
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.0239654	Pattern: motif3.motif Significance: 0.0130846
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 3.35363e-07	Pattern: motif15.motif Significance: 1.48243e-06
KDNY;P0;D;En	Pattern: metacluster_1/pattern_3 Significance: 6.42425e-07	Pattern: motif4.motif Significance: 2.46225e-10

Unique Cell types only TF-MoDISco finds Cdx4: #15

Cell type	Modisco	Homer
MPP;A;CL	Pattern: metacluster_1/pattern_21 Significance: 3.87417e-05	Absent
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0139593	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00081863	Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_11 Significance: 0.00225188	Absent
wES;posterior;1;E9.5;A;GEO	Pattern: metacluster_1/pattern_9 Significance: 0.00735051	Absent
KDNY;8wks;D;En	Pattern: metacluster_1/pattern_19 Significance: 3.63333e-08	Absent
wES;NRL_Tube;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00380717	Absent
LNG_TRM_HSC;A;CL	Pattern: metacluster_1/pattern_20 Significance: 4.7372900000000005e-06	Absent
AML;D;En	Pattern: metacluster_1/pattern_18 Significance: 8.67652e-05	Absent
NIH3T3_FBROBLST;D;En	Pattern: metacluster_1/pattern_20 Significance: 6.240670000000001e-05	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.00438758	Absent
CLP;A;CL	Pattern: metacluster_1/pattern_21 Significance: 0.00232817	Absent
Adrenal;A;CL	Pattern: metacluster_1/pattern_10 Significance: 5.51994e-07	Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_1/pattern_17 Significance: 0.00581348	Absent
wES;5th_Rhmbmr;E9.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.019753599999999996	Absent

No Cell types only Homer finds Cdx4