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![[PARENTDIR]](/icons/back.gif){kind=icon}
![[ ]](/icons/unknown.gif){kind=icon}
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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| AUTHORS | 2021-06-24 20:45 | 1.3K | |
| CMakeLists.txt | 2021-06-24 20:45 | 6.1K | |
| LICENSE | 2021-06-24 20:45 | 34K | |
| MANUAL.markdown | 2021-06-24 20:45 | 77K | |
| TUTORIAL | 2021-06-24 20:45 | 202 | |
| aligner_bt.cpp | 2021-06-24 20:45 | 53K | |
| aligner_result.cpp | 2021-06-24 20:45 | 57K | |
| aligner_seed2.cpp | 2021-06-24 20:45 | 41K | |
| aligner_seed_policy.cpp | 2021-06-24 20:45 | 30K | |
| aligner_seed_policy.h | 2021-06-24 20:45 | 8.2K | |
| aligner_sw_driver.h | 2021-06-24 20:45 | 106K | |
| aligner_swsse.h | 2021-06-24 20:45 | 15K | |
| aligner_swsse_ee_i16.cpp | 2021-06-24 20:45 | 62K | |
| alignment_3n_table.h | 2021-06-24 20:45 | 9.0K | |
| alphabet.h | 2021-06-24 20:45 | 5.5K | |
| alt.h | 2021-06-24 20:45 | 8.3K | |
| assert_helpers.h | 2021-06-24 20:45 | 9.3K | |
| banded.cpp | 2021-06-24 20:45 | 823 | |
| btypes.h | 2021-06-24 20:45 | 1.3K | |
| ccnt_lut.cpp | 2021-06-24 20:45 | 1.9K | |
| diff_sample.h | 2021-06-24 20:45 | 31K | |
| docs_jhu/ | 2021-06-24 20:45 | - | |
| ds.h | 2021-06-24 20:45 | 89K | |
| edit.cpp | 2021-06-24 20:45 | 12K | |
| example/ | 2021-06-24 20:45 | - | |
| filebuf.h | 2021-06-24 20:45 | 16K | |
| formats.h | 2021-06-24 20:45 | 1.2K | |
| gp.h | 2021-06-24 20:45 | 2.0K | |
| group_walk.cpp | 2021-06-24 20:45 | 759 | |
| group_walk.h | 2021-06-24 20:45 | 56K | |
| hisat-3n | 2021-06-24 20:45 | 20K | |
| hisat2 | 2021-06-24 20:45 | 19K | |
| hisat2-align-s | 2021-06-24 20:47 | 13M | |
| hisat2-build-l | 2021-06-24 20:46 | 5.5M | |
| hisat2-inspect-s | 2021-06-24 20:49 | 3.3M | |
| hisat2-repeat | 2021-06-24 20:50 | 7.1M | |
| hisat2.sln | 2021-06-24 20:45 | 5.3K | |
| hisat2.xcodeproj/ | 2021-06-24 20:45 | - | |
| hisat2_extract_snps_haplotypes_VCF.py | 2021-06-24 20:45 | 34K | |
| hisat_3n_table.cpp | 2021-06-24 20:45 | 12K | |
| hisat_bp.cpp | 2021-06-24 20:45 | 151K | |
| mask.cpp | 2021-06-24 20:45 | 1.0K | |
| mask.h | 2021-06-24 20:45 | 2.1K | |
| mem_ids.h | 2021-06-24 20:45 | 1.2K | |
| mm.h | 2021-06-24 20:45 | 1.5K | |
| msvcc/ | 2021-06-24 20:45 | - | |
| multikey_qsort.cpp | 2021-06-24 20:45 | 763 | |
| multikey_qsort.h | 2021-06-24 20:45 | 38K | |
| pat.cpp | 2021-06-24 20:45 | 47K | |
| pat.h | 2021-06-24 20:45 | 44K | |
| position_3n.h | 2021-06-24 20:45 | 10K | |
| presets.cpp | 2021-06-24 20:45 | 2.6K | |
| qual.cpp | 2021-06-24 20:45 | 3.9K | |
| read_qseq.cpp | 2021-06-24 20:45 | 8.2K | |
| ref_coord.cpp | 2021-06-24 20:45 | 1.0K | |
| reference.cpp | 2021-06-24 20:45 | 23K | |
| repeat_builder.cpp | 2021-06-24 20:45 | 161K | |
| repeat_builder.h | 2021-06-24 20:45 | 27K | |
| repeat_kmer.h | 2021-06-24 20:45 | 20K | |
| sam.h | 2021-06-24 20:45 | 56K | |
| scoring.h | 2021-06-24 20:45 | 18K | |
| simple_func.cpp | 2021-06-24 20:45 | 2.3K | |
| simple_func.h | 2021-06-24 20:45 | 3.4K | |
| splice_site.cpp | 2021-06-24 20:45 | 33K | |
| spliced_aligner.h | 2021-06-24 20:45 | 113K | |
| sse_util.cpp | 2021-06-24 20:45 | 1.0K | |
| sse_util.h | 2021-06-24 20:45 | 14K | |
| sstring.h | 2021-06-24 20:45 | 75K | |
| str_util.h | 2021-06-24 20:45 | 1.1K | |
| tokenize.h | 2021-06-24 20:45 | 1.7K | |
| unique.h | 2021-06-24 20:45 | 14K | |
| util.h | 2021-06-24 20:45 | 1.5K | |
| utility_3n_table.h | 2021-06-24 20:45 | 9.2K | |