Index of /kundaje/marinovg/oak/papers/2024_ToL_Hi-C/2023-07-09/03-Dinoflagellata-Durinskia_oculata/juicer-hifiasm.hic.p_ctg-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2023-10-02 04:34 1.0K 
[TXT]README.md2023-10-02 04:34 8.7K 
[TXT]archive.hifiasm.hic.p_ctg.edits.at.step.1.txt2023-10-02 18:01 314K 
[ ]coverage_wide.at.step.0.wig2023-10-02 15:12 146K 
[ ]coverage_wide.at.step.1.wig2023-10-02 18:01 146K 
[DIR]data/2023-10-02 04:34 -  
[ ]depletion_score_narrow.at.step.0.wig2023-10-02 15:12 2.4M 
[ ]depletion_score_narrow.at.step.1.wig2023-10-02 18:01 2.4M 
[ ]depletion_score_wide.at.step.0.wig2023-10-02 15:09 134K 
[ ]depletion_score_wide.at.step.1.wig2023-10-02 17:59 135K 
[DIR]edit/2023-10-02 04:34 -  
[TXT]edits.for.step.1.txt2023-10-02 15:12 450K 
[TXT]edits.for.step.2.txt2023-10-02 18:01 87K 
[DIR]finalize/2023-10-02 04:34 -  
[TXT]h.edits.txt2023-10-02 20:24 312  
[ ]hifiasm.hic.p_ctg.0.asm2023-10-02 14:42 25K 
[ ]hifiasm.hic.p_ctg.0.assembly2023-10-02 14:46 135K 
[ ]hifiasm.hic.p_ctg.0.cprops2023-10-02 04:35 105K 
[ ]hifiasm.hic.p_ctg.0.hic2023-10-02 15:09 160M 
[TXT]hifiasm.hic.p_ctg.0_asm.scaffold_track.txt2023-10-02 14:46 569K 
[TXT]hifiasm.hic.p_ctg.0_asm.superscaf_track.txt2023-10-02 14:46 32K 
[ ]hifiasm.hic.p_ctg.1.asm2023-10-02 17:29 35K 
[ ]hifiasm.hic.p_ctg.1.assembly2023-10-02 17:33 275K 
[ ]hifiasm.hic.p_ctg.1.cprops2023-10-02 15:12 233K 
[ ]hifiasm.hic.p_ctg.1.hic2023-10-02 17:58 164M 
[TXT]hifiasm.hic.p_ctg.1_asm.scaffold_track.txt2023-10-02 17:33 941K 
[TXT]hifiasm.hic.p_ctg.1_asm.superscaf_track.txt2023-10-02 17:33 509K 
[ ]hifiasm.hic.p_ctg.2.asm2023-10-02 19:36 40K 
[ ]hifiasm.hic.p_ctg.2.assembly2023-10-02 19:38 318K 
[ ]hifiasm.hic.p_ctg.2.cprops2023-10-02 18:01 271K 
[ ]hifiasm.hic.p_ctg.2.hic2023-10-02 19:56 165M 
[TXT]hifiasm.hic.p_ctg.2_asm.scaffold_track.txt2023-10-02 19:38 1.0M 
[TXT]hifiasm.hic.p_ctg.2_asm.superscaf_track.txt2023-10-02 19:38 608K 
[ ]hifiasm.hic.p_ctg.FINAL.assembly2023-10-02 21:11 293K 
[ ]hifiasm.hic.p_ctg.FINAL.fasta2023-10-02 21:11 198M 
[ ]hifiasm.hic.p_ctg.FINAL.hic2023-10-02 21:31 167M 
[TXT]hifiasm.hic.p_ctg.FINAL_asm.scaffold_track.txt2023-10-02 21:17 966K 
[TXT]hifiasm.hic.p_ctg.FINAL_asm.superscaf_track.txt2023-10-02 21:17 548K 
[ ]hifiasm.hic.p_ctg.cprops2023-10-02 04:35 105K 
[TXT]hifiasm.hic.p_ctg.edits.txt2023-10-02 18:01 367K 
[ ]hifiasm.hic.p_ctg.final.asm2023-10-02 20:45 36K 
[ ]hifiasm.hic.p_ctg.final.assembly2023-10-02 20:51 282K 
[ ]hifiasm.hic.p_ctg.final.cprops2023-10-02 20:45 239K 
[ ]hifiasm.hic.p_ctg.final.fasta2023-10-02 21:10 197M 
[ ]hifiasm.hic.p_ctg.final.hic2023-10-02 21:06 165M 
[ ]hifiasm.hic.p_ctg.polished.asm2023-10-02 20:05 40K 
[ ]hifiasm.hic.p_ctg.polished.cprops2023-10-02 19:58 274K 
[ ]hifiasm.hic.p_ctg.polished.depletion_score_narrow.wig2023-10-02 19:58 2.5M 
[ ]hifiasm.hic.p_ctg.polished.depletion_score_wide.wig2023-10-02 19:56 33K 
[TXT]hifiasm.hic.p_ctg.polished.edits_2D.txt2023-10-02 19:58 8.8K 
[ ]hifiasm.hic.p_ctg.polished.hic2023-10-02 20:22 165M 
[ ]hifiasm.hic.p_ctg.polished.mismatch_narrow.bed2023-10-02 19:58 4.7K 
[ ]hifiasm.hic.p_ctg.polished.mismatch_wide.bed2023-10-02 19:56 386  
[TXT]hifiasm.hic.p_ctg.polished.mismatches_2D.txt2023-10-02 19:58 4.3K 
[ ]hifiasm.hic.p_ctg.polished.split.assembly2023-10-02 20:30 322K 
[ ]hifiasm.hic.p_ctg.polished.split.depletion_score_narrow.wig2023-10-02 20:24 2.5M 
[ ]hifiasm.hic.p_ctg.polished.split.depletion_score_wide.wig2023-10-02 20:22 33K 
[TXT]hifiasm.hic.p_ctg.polished.split.edits_2D.txt2023-10-02 20:24 352  
[ ]hifiasm.hic.p_ctg.polished.split.mismatch_narrow.bed2023-10-02 20:24 4.3K 
[ ]hifiasm.hic.p_ctg.polished.split.mismatch_wide.bed2023-10-02 20:22 360  
[TXT]hifiasm.hic.p_ctg.polished.split.mismatches_2D.txt2023-10-02 20:24 1.6K 
[TXT]hifiasm.hic.p_ctg.polished.split.suspicious_2D.txt2023-10-02 20:24 1.9K 
[TXT]hifiasm.hic.p_ctg.polished.suspect_2D.txt2023-10-02 19:58 13K 
[TXT]hifiasm.hic.p_ctg.polished_asm.scaffold_track.txt2023-10-02 20:07 1.1M 
[TXT]hifiasm.hic.p_ctg.polished_asm.superscaf_track.txt2023-10-02 20:07 622K 
[ ]hifiasm.hic.p_ctg.rawchrom.asm2023-10-02 20:45 36K 
[ ]hifiasm.hic.p_ctg.rawchrom.assembly2023-10-02 20:51 282K 
[ ]hifiasm.hic.p_ctg.rawchrom.cprops2023-10-02 20:45 239K 
[ ]hifiasm.hic.p_ctg.rawchrom.fasta2023-10-02 21:10 197M 
[ ]hifiasm.hic.p_ctg.rawchrom.hic2023-10-02 21:06 165M 
[TXT]hifiasm.hic.p_ctg.rawchrom_asm.scaffold_track.txt2023-10-02 20:51 965K 
[TXT]hifiasm.hic.p_ctg.rawchrom_asm.superscaf_track.txt2023-10-02 20:51 548K 
[ ]hifiasm.hic.p_ctg.resolved.asm2023-10-02 19:36 40K 
[ ]hifiasm.hic.p_ctg.resolved.cprops2023-10-02 18:01 271K 
[ ]hifiasm.hic.p_ctg.resolved.hic2023-10-02 19:56 165M 
[ ]hifiasm.hic.p_ctg.resolved.polish.assembly2023-10-02 20:07 322K 
[TXT]hifiasm.hic.p_ctg.resolved_asm.scaffold_track.txt2023-10-02 19:38 1.0M 
[TXT]hifiasm.hic.p_ctg.resolved_asm.superscaf_track.txt2023-10-02 19:38 608K 
[ ]hifiasm.hic.p_ctg.split.asm2023-10-02 20:28 40K 
[ ]hifiasm.hic.p_ctg.split.assembly2023-10-02 20:45 322K 
[ ]hifiasm.hic.p_ctg.split.cprops2023-10-02 20:24 274K 
[ ]hifiasm.hic.p_ctg.split.hic2023-10-02 20:45 165M 
[TXT]hifiasm.hic.p_ctg.split_asm.scaffold_track.txt2023-10-02 20:30 1.1M 
[TXT]hifiasm.hic.p_ctg.split_asm.superscaf_track.txt2023-10-02 20:30 623K 
[DIR]lift/2023-10-02 04:34 -  
[DIR]merge/2023-10-02 04:34 -  
[ ]mismatch_narrow.at.step.0.bed2023-10-02 15:12 24K 
[ ]mismatch_narrow.at.step.1.bed2023-10-02 18:01 63K 
[ ]mismatch_wide.at.step.0.bed2023-10-02 15:09 9.4K 
[ ]mismatch_wide.at.step.1.bed2023-10-02 17:59 6.8K 
[TXT]mismatches.at.step.0.txt2023-10-02 15:12 17K 
[TXT]mismatches.at.step.1.txt2023-10-02 18:01 18K 
[DIR]polish/2023-10-02 04:34 -  
[ ]repeats_wide.at.step.0.bed2023-10-02 15:12 22K 
[ ]repeats_wide.at.step.1.bed2023-10-02 18:01 17K 
[TXT]run-asm-pipeline-post-review.sh2023-10-02 04:34 11K 
[TXT]run-asm-pipeline.sh2023-10-02 04:34 44K 
[DIR]scaffold/2023-10-02 04:34 -  
[DIR]seal/2023-10-02 04:34 -  
[DIR]split/2023-10-02 04:34 -  
[DIR]split_chrom_aware/2023-10-02 04:34 -  
[DIR]supp/2023-10-02 04:34 -  
[ ]suspect.at.step.0.bed2023-10-02 15:12 34K 
[ ]suspect.at.step.1.bed2023-10-02 18:01 34K 
[TXT]suspect_2D.at.step.0.txt2023-10-02 15:12 467K 
[TXT]suspect_2D.at.step.1.txt2023-10-02 18:01 105K 
[DIR]utils/2023-10-02 04:34 -  
[DIR]visualize/2023-10-02 04:34 -  
[ ]z2023-10-02 04:34 351  
[ ]z3D-02.1.err2023-10-02 21:15 14K 
[ ]z3D-02.1.out2023-10-02 21:31 40K 
[ ]z3D-02.1.sbatch2023-10-02 04:34 564  
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