./run-asm-pipeline.sh --sort-output --build-gapped-map -i 1000 /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/03-Dinoflagellata-Durinskia_oculata/hifiasm.hic.p_ctg.fa /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/03-Dinoflagellata-Durinskia_oculata/juicer-hifiasm.hic.p_ctg/aligned/merged_nodups.txt &