Index of /kundaje/marinovg/oak/papers/2019_NComm_CTCF-screen/2018-04-11-Old-ATAC-reprocessing

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]map-chrM.sh2018-04-12 06:51 12K 
[ ]fimo.condor2018-04-13 12:34 424K 
[ ]SAMstats-chrM.files2018-04-14 06:23 1.1K 
[TXT]map-bwa.sh2018-04-14 17:20 5.9K 
[ ]SAMstats-nochrM.dedup.files2018-04-15 01:07 1.6K 
[ ]SAMstats.files2018-04-15 01:08 1.3K 
[ ]SAMstats-chrM.table2018-04-15 01:08 1.1K 
[ ]SAMstats.table2018-04-15 01:08 1.1K 
[ ]SAMstats-nochrM.dedup.table2018-04-15 01:08 1.1K 
[TXT]MACS2.sh2018-04-15 01:14 5.3K 
[TXT]MACS2-IDR.sh2018-04-15 01:17 15K 
[ ]SAMstats-nochrM.files2018-04-15 01:23 1.4K 
[ ]MACS2018-04-15 01:40 1.8K 
[ ]MACS-region-stats2018-04-15 01:46 2.2K 
[IMG]A-13189.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:02 480K 
[IMG]KO-13004.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.png2018-04-15 02:02 484K 
[ ]A-13189.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:02 5.5M 
[ ]KO-13004.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.gz2018-04-15 02:02 4.8M 
[IMG]A-N4371.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:02 467K 
[ ]A-N4371.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:02 6.3M 
[IMG]A-15171.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.png2018-04-15 02:02 494K 
[ ]A-15171.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.gz2018-04-15 02:03 5.2M 
[IMG]KO-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:03 467K 
[ ]KO-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:03 5.3M 
[IMG]KO-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.png2018-04-15 02:03 466K 
[ ]KO-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.gz2018-04-15 02:04 5.3M 
[IMG]KO-13006.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:04 462K 
[ ]KO-13006.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:04 5.2M 
[IMG]A-15173.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:04 454K 
[ ]A-15173.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:04 6.2M 
[IMG]A-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:04 469K 
[IMG]A-13190.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:04 449K 
[ ]A-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:04 5.8M 
[ ]A-13190.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:04 6.3M 
[IMG]KO-13004.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:04 467K 
[ ]KO-13004.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:04 5.4M 
[IMG]A-15171.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:06 477K 
[IMG]A-13189.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.png2018-04-15 02:06 512K 
[ ]A-15171.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:06 5.7M 
[IMG]A-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.png2018-04-15 02:06 480K 
[ ]A-13189.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.gz2018-04-15 02:06 5.5M 
[ ]A-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR.gz2018-04-15 02:06 5.2M 
[IMG]KO-N4371.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.png2018-04-15 02:07 466K 
[ ]KO-N4371.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR.gz2018-04-15 02:07 5.8M 
[ ]A-13189.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR-0.05.gz2018-04-15 02:11 2.6M 
[ ]A-15171.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR-0.05.gz2018-04-15 02:11 2.7M 
[ ]A-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR-0.05.gz2018-04-15 02:11 2.7M 
[ ]KO-13004.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR-0.05.gz2018-04-15 02:12 2.4M 
[ ]KO-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.pseudoRep.IDR-0.05.gz2018-04-15 02:12 2.4M 
[ ]A-13189.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.6M 
[ ]A-13190.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.8M 
[ ]A-15171.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.7M 
[ ]A-15173.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.8M 
[ ]A-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.6M 
[ ]A-N4371.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.8M 
[ ]KO-13004.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.3M 
[ ]KO-13006.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.2M 
[ ]KO-N4293.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.3M 
[ ]KO-N4371.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.indRep.IDR-0.05.gz2018-04-15 02:12 2.6M 
[ ]SAMstats-nochrM.table2018-04-15 03:27 1.1K 
[DIR]SAMstats-files/2018-04-15 03:27 -  
[ ]MACS-IDR.gz2018-04-15 03:32 184  
[ ]MACS-IDR-region-stats2018-04-15 03:58 1.8K 
[TXT]ATACTSSscore.txt2018-04-15 04:15 2.6K 
[ ]z2018-04-16 04:44 6.6K 
[ ]z.1.sbatch2018-04-16 04:44 533  
[ ]z.2.sbatch2018-04-16 04:44 533  
[ ]z.3.sbatch2018-04-16 04:44 533  
[ ]z.4.sbatch2018-04-16 04:44 533  
[ ]z.1.err2018-04-16 04:44 0  
[ ]z.2.err2018-04-16 04:44 0  
[ ]z.3.err2018-04-16 04:44 0  
[ ]z.5.sbatch2018-04-16 04:44 533  
[ ]z.6.sbatch2018-04-16 04:44 533  
[ ]z.7.sbatch2018-04-16 04:44 533  
[ ]z.8.sbatch2018-04-16 04:44 533  
[ ]z.9.sbatch2018-04-16 04:44 533  
[ ]z.10.sbatch2018-04-16 04:44 536  
[ ]z.11.sbatch2018-04-16 04:44 536  
[ ]z.12.sbatch2018-04-16 04:44 536  
[ ]z.13.sbatch2018-04-16 04:44 539  
[ ]z.14.sbatch2018-04-16 04:44 539  
[ ]z.15.sbatch2018-04-16 04:44 539  
[ ]z.16.sbatch2018-04-16 04:44 539  
[ ]z.17.sbatch2018-04-16 04:44 539  
[ ]z.18.sbatch2018-04-16 04:44 539  
[ ]z.19.sbatch2018-04-16 04:44 539  
[ ]z.20.sbatch2018-04-16 04:44 539  
[ ]z.18.err2018-04-16 04:44 0  
[ ]z.19.err2018-04-16 04:44 0  
[ ]z.20.err2018-04-16 04:44 0  
[ ]z.4.err2018-04-16 04:44 0  
[ ]z.5.err2018-04-16 04:44 0  
[ ]z.6.err2018-04-16 04:44 0  
[ ]z.16.err2018-04-16 04:44 0  
[ ]z.17.err2018-04-16 04:44 0  
[ ]z.7.err2018-04-16 04:44 0  
[ ]z.8.err2018-04-16 04:44 0  
[ ]z.9.err2018-04-16 04:44 0  
[ ]z.10.err2018-04-16 04:44 0  
[ ]z.11.err2018-04-16 04:44 0  
[ ]z.12.err2018-04-16 04:44 0  
[ ]z.13.err2018-04-16 04:44 0  
[ ]z.14.err2018-04-16 04:44 0  
[ ]z.15.err2018-04-16 04:44 0  
[ ]A-N4371.indRep.IDR-0.05.RPM.files2018-04-16 04:47 1.1K 
[ ]z.6.out2018-04-16 04:47 3.8K 
[ ]z.18.out2018-04-16 04:48 3.8K 
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[ ]z.11.out2018-04-16 04:48 3.8K 
[ ]z.14.out2018-04-16 04:48 3.8K 
[ ]z.1.out2018-04-16 04:49 3.8K 
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[ ]z.13.out2018-04-16 04:54 3.8K 
[ ]A-N4371.indRep.IDR-0.05.RPM.table2018-04-16 04:59 16M 
[ ]CRISPR_13189.1MB-locus.bed2018-04-16 05:02 25  
[ ]CRISPR_15173.1MB-locus.bed2018-04-16 05:03 23  
[ ]CRISPR_13004.1MB-locus.bed2018-04-16 05:03 25  
[ ]A-N4371.indRep.IDR-0.05.RPM-vs-CRISPR_15173.1MB-locus-intersection2018-04-16 05:07 8.9K 
[ ]A-N4371.indRep.IDR-0.05.RPM-vs-CRISPR_13004.1MB-locus-intersection2018-04-16 05:07 16K 
[ ]A-N4371.indRep.IDR-0.05.RPM-vs-CRISPR_13189.1MB-locus-intersection2018-04-16 05:07 7.4K 
[ ]CRISPR_13004.site.bed2018-04-16 05:11 25  
[ ]A-N4371.indRep.IDR-0.05.RPM-vs-CRISPR_13189.site-intersection2018-04-16 05:11 0  
[ ]A-N4371.indRep.IDR-0.05.RPM-vs-CRISPR_15173.site-intersection2018-04-16 05:11 0  
[ ]A-N4371.indRep.IDR-0.05.RPM-vs-CRISPR_13004.site-intersection2018-04-16 05:11 303  
[ ]CRISPR_13189.site.bed2018-04-16 05:14 25  
[ ]CRISPR_15173.site.bed2018-04-16 05:14 23  
[ ]A-N4371.indRep.IDR-0.05.rescaled.RPM.files2018-04-16 05:25 1.3K 
[ ]A-N4371.indRep.IDR-0.05.rescaled.RPM.table2018-04-16 05:25 16M 
[ ]A-N4371.indRep.IDR-0.05.rescaled.RPM-vs-CRISPR_13189.site-intersection22018-04-16 05:25 0  
[ ]A-N4371.indRep.IDR-0.05.rescaled.RPM-vs-CRISPR_15173.site-intersection22018-04-16 05:25 0  
[ ]A-N4371.indRep.IDR-0.05.rescaled.RPM-vs-CRISPR_13004.site-intersection22018-04-16 05:25 304  
[ ]A-N4371.indRep.IDR-0.05.rescaled.RPM-vs-CRISPR_13004.1MB-locus-intersection22018-04-16 05:25 15K 
[ ]A-N4371.indRep.IDR-0.05.rescaled.RPM-vs-CRISPR_13189.1MB-locus-intersection22018-04-16 05:25 7.4K 
[ ]A-N4371.indRep.IDR-0.05.rescaled.RPM-vs-CRISPR_15173.1MB-locus-intersection22018-04-16 05:25 8.9K 
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