/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13190-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n A-13190-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15171-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n A-15171-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15173-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n A-15173-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.bam -n KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13190-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n A-13190-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15171-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n A-15171-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15173-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n A-15173-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.bam -n KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep1.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13190-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n A-13190-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15171-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n A-15171-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15173-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n A-15173-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.bam -n KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.merged.sorted.pseudoRep2.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-13189-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13189-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-13189-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13190-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-13190-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-13190-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-13190-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15171-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-15171-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15171-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-15171-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15173-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-15173-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-15173-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-15173-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4293-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-N4293-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t A-N4371-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n A-N4371-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n KO-13004-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13004-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n KO-13004-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-13006-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n KO-13006-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4293-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n KO-N4293-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t KO-N4371-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam -n KO-N4371-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.MACS-2.1.0.p1e-1 -g hs -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
 