Homer Known Motif Enrichment Results (/srv/scratch/jisraeli/projects/jzeitlinger_collab/homer_analysis/cluster_3_homer)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 1937, Total Background Sequences = 7411
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File SVG
1 G A T C G C T A A G C T G C A T A G T C C T G A T A G C G A C T STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer1e-6-1.411e+010.00071604.082.81%5810.178.40%motif file (matrix) svg
2 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-5-1.351e+010.00071387.071.61%4937.466.62%motif file (matrix) svg
3 C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T SeqBias: A/T bias1e-4-1.113e+010.00451932.099.74%7327.398.87%motif file (matrix) svg
4 T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer1e-4-1.101e+010.0045623.032.16%2064.927.86%motif file (matrix) svg
5 A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer1e-4-1.079e+010.0045838.043.26%2866.438.68%motif file (matrix) svg
6 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer1e-4-9.707e+000.0094942.048.63%3280.444.26%motif file (matrix) svg
7 T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer1e-4-9.486e+000.0100529.027.31%1747.023.57%motif file (matrix) svg
8 C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A SeqBias: GA-repeat1e-4-9.224e+000.01141661.085.75%6121.382.60%motif file (matrix) svg
9 A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G SeqBias: CG bias1e-3-8.833e+000.01491672.086.32%6173.783.30%motif file (matrix) svg
10 A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer1e-3-8.749e+000.0149881.045.48%3069.241.41%motif file (matrix) svg
11 G T A C G T C A G T A C G T C A G T A C G T C A G T A C G T C A G T A C G T C A SeqBias: CA-repeat1e-3-8.742e+000.01491518.078.37%5547.174.85%motif file (matrix) svg
12 A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-3-8.714e+000.01491258.064.95%4518.960.98%motif file (matrix) svg
13 C G T A G A T C A G C T A C G T A C G T A C T G C G T A G T A C A G C T G C T A C G A T C G A T C G A T G C A T G C T A WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer1e-3-8.658e+000.0149588.030.36%1978.126.69%motif file (matrix) svg
14 G T A C A G C T T C G A G T A C A G T C C A G T C G T A G T C A G A T C G C A T MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer1e-3-8.628e+000.0149459.023.70%1508.520.35%motif file (matrix) svg
15 C G T A C G T A C G T A C G A T C G T A A C G T A G T C G C A T At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer1e-3-8.405e+000.0149186.09.60%549.37.41%motif file (matrix) svg
16 G C T A G C A T G C T A G C A T G C A T C G T A C G T A A G T C A G T C A C T G G C A T G C A T C G T A G C T A G C T A MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer1e-3-8.306e+000.0149698.036.04%2392.432.28%motif file (matrix) svg
17 C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer1e-3-8.259e+000.0149578.029.84%1949.926.31%motif file (matrix) svg
18 G A C T C T G A G T A C A G T C C G A T C G T A G T C A G A T C G C A T G C A T G C A T C G A T AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer1e-3-8.159e+000.0149163.08.42%474.76.41%motif file (matrix) svg
19 T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer1e-3-8.042e+000.0156668.034.49%2286.630.85%motif file (matrix) svg
20 G C A T G C A T G C T A G C A T G A T C C G A T A C G T C G T A A C G T A G T C G A C T G C A T G C A T G C A T G C A T At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer1e-3-7.581e+000.0235504.026.02%1691.322.82%motif file (matrix) svg
21 C G T A C T A G A C G T A C G T G C T A C T A G A C T G A G T C C T G A C T A G MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer1e-3-7.354e+000.0281267.013.78%843.611.38%motif file (matrix) svg
22 C G T A G A T C C A T G G C A T G A C T C T A G T C G A T A G C A G C T G C A T WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer1e-3-7.345e+000.0281433.022.35%1437.819.40%motif file (matrix) svg
23 G T A C T G A C A T G C A G T C A C T G G A T C A T C G G A T C SUT1?/SacCer-Promoters/Homer1e-3-7.306e+000.02811335.068.92%4851.465.46%motif file (matrix) svg
24 T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer1e-3-7.266e+000.0281104.05.37%287.43.88%motif file (matrix) svg
25 G A C T A C G T C T G A T G A C T A G C C G A T G C T A G T C A G A T C G A C T MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer1e-3-7.191e+000.0281192.09.91%584.97.89%motif file (matrix) svg
26 C G T A C G T A G C A T A C T G C G T A A G C T C T G A C G T A T A C G C T G A ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer1e-3-7.153e+000.0281147.07.59%431.75.83%motif file (matrix) svg
27 A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer1e-3-7.146e+000.0281521.026.90%1762.623.78%motif file (matrix) svg
28 A C T G C G T A A C G T C G T A C T G A A C T G T C A G G C A T At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer1e-3-7.029e+000.0292295.015.23%947.512.78%motif file (matrix) svg
29 A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer1e-3-6.977e+000.029733.01.70%69.80.94%motif file (matrix) svg
30 C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer1e-3-6.945e+000.0297973.050.23%3460.746.70%motif file (matrix) svg
31 C G T A A G T C T G A C A G C T A C G T C G T A A C G T A G T C At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer1e-2-6.884e+000.0304314.016.21%1017.313.73%motif file (matrix) svg
32 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer1e-2-6.874e+000.0304792.040.89%2776.137.46%motif file (matrix) svg
33 G C T A T G A C G A T C C G A T G A C T A T G C C T G A A T C G G C A T A C G T JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer1e-2-6.608e+000.0377570.029.43%1954.126.37%motif file (matrix) svg
34 C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-2-6.592e+000.03771000.051.63%3572.548.21%motif file (matrix) svg
35 A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C TATA-Box(TBP)/Promoter/Homer1e-2-6.552e+000.0377561.028.96%1922.025.93%motif file (matrix) svg
36 C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer1e-2-6.460e+000.04011396.072.07%5111.468.97%motif file (matrix) svg
37 C G T A C G T A C G T A A C G T C G T A A C G T A G T C G C A T RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer1e-2-6.420e+000.0406172.08.88%525.47.09%motif file (matrix) svg
38 G A C T A C G T C G A T A G C T A G T C C G T A A C T G A C T G C G A T C T A G NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer1e-2-6.401e+000.0406848.043.78%2999.740.48%motif file (matrix) svg
39 C T G A T A C G A C G T C T A G C G T A T C G A C T G A C G A T At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer1e-2-6.392e+000.04061539.079.45%5680.776.65%motif file (matrix) svg
40 T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C Sp1(Zf)/Promoter/Homer1e-2-6.202e+000.046744.02.27%105.81.43%motif file (matrix) svg
41 C G A T C G T A G C T A G C A T G C A T C T G A A C T G A C G T A G T C C G T A C G T A G T A C T C A G G C T A C G A T WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer1e-2-6.088e+000.0510391.020.19%1309.817.67%motif file (matrix) svg
42 C T G A A C G T A T G C G C A T A G T C C G T A A T G C A C G T AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer1e-2-5.948e+000.05731443.074.50%5309.871.65%motif file (matrix) svg
43 G C A T G A T C T C A G G C T A G A C T A G T C C T A G C G T A C A T G G T C A GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer1e-2-5.946e+000.0573649.033.51%2263.430.54%motif file (matrix) svg
44 A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer1e-2-5.934e+000.0573341.017.60%1131.515.27%motif file (matrix) svg
45 G A C T A C G T A C G T A C T G A C G T A G T C G C A T A G C T G C A T G C A T G A C T A G C T SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer1e-2-5.885e+000.0573367.018.95%1226.216.55%motif file (matrix) svg
46 C A G T C A T G T G C A G T A C C G T A T C A G G T A C G A C T T C A G C T G A bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer1e-2-5.884e+000.05731401.072.33%5145.269.43%motif file (matrix) svg
47 C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer1e-2-5.830e+000.0576417.021.53%1409.019.01%motif file (matrix) svg
48 T A G C G T A C A G T C G T A C C G A T A G T C A G T C A G T C A G T C A G T C C G T A G A T C Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer1e-2-5.823e+000.0576136.07.02%409.55.53%motif file (matrix) svg
49 G C A T C G T A G C T A G A C T C G A T G A C T A G T C C A G T A G T C A G T C A C T G C T A G G T A C C T A G C T G A AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer1e-2-5.803e+000.0576317.016.37%1047.114.13%motif file (matrix) svg
50 A G T C C T A G A C G T A C G T A C T G C G T A A G T C A G C T G C T A G C A T WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer1e-2-5.731e+000.0598303.015.64%998.813.48%motif file (matrix) svg
51 C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-2-5.708e+000.06001252.064.64%4567.661.63%motif file (matrix) svg
52 G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer1e-2-5.623e+000.0641430.022.20%1461.619.72%motif file (matrix) svg
53 C A T G G T A C G A T C A C T G A C G T A G C T C G T A C G T A AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer1e-2-5.598e+000.0645178.09.19%557.67.52%motif file (matrix) svg
54 A T G C C A T G A C G T A C G T A C T G C G T A A G T C G A C T G C A T C G A T WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer1e-2-5.467e+000.0721298.015.38%985.813.30%motif file (matrix) svg
55 C G A T G A T C T A C G C T G A G C T A C G T A G C A T A G T C C T A G C G T A G C A T C G A T AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer1e-2-5.461e+000.0721176.09.09%552.47.45%motif file (matrix) svg
56 G A C T C T G A C G T A T G A C T A G C A C T G A C G T C G A T C G T A G A T C C T G A C G T A MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer1e-2-5.447e+000.072196.04.96%278.43.76%motif file (matrix) svg
57 G C A T C A G T C G T A G C T A A T C G T C A G C G A T T C A G A G T C C G T A A G T C G T A C AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer1e-2-5.443e+000.0721445.022.97%1520.420.52%motif file (matrix) svg
58 C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer1e-2-5.414e+000.0721303.015.64%1004.513.55%motif file (matrix) svg
59 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer1e-2-5.320e+000.0764789.040.73%2805.837.86%motif file (matrix) svg
60 G C A T C T A G C T A G C G T A A G C T C G T A C T G A C A T G C T A G G C A T AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer1e-2-5.311e+000.0764430.022.20%1468.619.82%motif file (matrix) svg
61 T C A G T G A C C A T G G C A T C A G T A C T G C G T A T G A C G A C T C G A T C G A T C G T A WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer1e-2-5.246e+000.0797234.012.08%761.010.27%motif file (matrix) svg
62 C T A G T C A G C A G T T C A G A C T G A C T G G A T C C T A G A C T G C T A G T C A G A T G C KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer1e-2-5.222e+000.0803536.027.67%1861.725.12%motif file (matrix) svg
63 C T G A G A T C G C A T A C T G C G T A A C G T C G T A C G T A T A C G T C G A PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer1e-2-5.127e+000.0869118.06.09%356.44.81%motif file (matrix) svg
64 G C A T T G A C C A T G G A C T C A G T C A T G T C G A G T A C G A C T G C T A C G A T C G A T WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer1e-2-5.076e+000.0900297.015.33%989.313.35%motif file (matrix) svg
65 C T G A C G T A A G T C T A G C A C T G A C G T G C A T G C T A MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer1e-2-5.065e+000.0900408.021.06%1393.718.81%motif file (matrix) svg
66 G A C T A G T C C G T A C G T A A G T C A G C T A C T G G A C T G T A C A T G C MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer1e-2-5.023e+000.0920423.021.84%1449.619.56%motif file (matrix) svg
67 T C G A C G T A C G T A T C G A A C T G G T A C C G T A A G C T G T C A G C A T At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer1e-2-5.005e+000.09231065.054.98%3866.052.17%motif file (matrix) svg
68 G C A T C G T A G C A T C G T A T C G A C G T A C T G A A C T G C G T A C G T A C G T A A C G T A C T G G T C A G C A T AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer1e-2-4.943e+000.0968122.06.30%372.15.02%motif file (matrix) svg
69 G C A T G C A T C G A T C G T A C T G A C T A G A C T G C T A G G A T C G C T A G A C T G C A T G C A T G C A T G A C T AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer1e-2-4.917e+000.0978833.043.00%2983.240.25%motif file (matrix) svg
70 C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer1e-2-4.878e+000.1002508.026.23%1766.123.83%motif file (matrix) svg
71 T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-2-4.858e+000.1009355.018.33%1204.716.26%motif file (matrix) svg
72 T G A C C A T G A C G T A C G T A C T G C G T A A G T C A G C T G C A T T C G A WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer1e-2-4.846e+000.100992.04.75%271.03.66%motif file (matrix) svg
73 C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer1e-2-4.778e+000.106333.01.70%80.41.09%motif file (matrix) svg
74 A G C T A T G C G A C T G C A T C G T A A G C T G T A C C G A T A T C G A G T C Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer1e-2-4.760e+000.1067314.016.21%1057.514.27%motif file (matrix) svg
75 G C T A C T G A C G T A C G T A C T G A C T G A C G A T G T C A A C G T A G T C G C A T G C A T At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer1e-2-4.753e+000.1067132.06.81%409.25.52%motif file (matrix) svg
76 C A G T A G C T C G T A G C A T A G T C G A C T C T A G C T A G C A G T C T A G T C G A T G C A C T A G C A T G G A C T STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer1e-2-4.736e+000.1067140.07.23%437.25.90%motif file (matrix) svg
77 A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-4.717e+000.1071519.026.79%1811.424.44%motif file (matrix) svg
78 G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-2-4.700e+000.1075524.027.05%1830.924.70%motif file (matrix) svg
79 A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer1e-2-4.698e+000.10751182.061.02%4325.158.36%motif file (matrix) svg
80 C G T A C G T A C G T A C G T A C G T A A C T G A G C T C T A G G T A C G C T A AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer1e-2-4.692e+000.1075448.023.13%1549.920.91%motif file (matrix) svg
81 A G C T C T G A A G T C A C T G A G C T T G C A C G T A A G T C ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer1e-2-4.654e+000.1084398.020.55%1366.618.44%motif file (matrix) svg
82 G C A T G C A T G C A T C G T A C G T A A C G T A C T G A C T G A C T G A G T C A G T C C G A T C G T A C G A T C G A T PCF/Arabidopsis-Promoters/Homer1e-2-4.651e+000.1084129.06.66%400.65.40%motif file (matrix) svg
83 A C T G A C G T C G A T C A G T C A T G C A T G C A G T G C A T C A G T C A T G HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer1e-2-4.646e+000.10841311.067.68%4827.265.13%motif file (matrix) svg