Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1937)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 7411)	% of Background Sequences with Motif
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-6	-1.411e+01	0.0007	1604.0	82.81%	5810.1	78.40%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-5	-1.351e+01	0.0007	1387.0	71.61%	4937.4	66.62%
SeqBias: A/T bias	WWWWWWWWWW	1e-4	-1.113e+01	0.0045	1932.0	99.74%	7327.3	98.87%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-4	-1.101e+01	0.0045	623.0	32.16%	2064.9	27.86%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-4	-1.079e+01	0.0045	838.0	43.26%	2866.4	38.68%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-4	-9.707e+00	0.0094	942.0	48.63%	3280.4	44.26%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-4	-9.486e+00	0.0100	529.0	27.31%	1747.0	23.57%
SeqBias: GA-repeat	GAGAGAGAGA	1e-4	-9.224e+00	0.0114	1661.0	85.75%	6121.3	82.60%
SeqBias: CG bias	SSSSSSSSSS	1e-3	-8.833e+00	0.0149	1672.0	86.32%	6173.7	83.30%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-3	-8.749e+00	0.0149	881.0	45.48%	3069.2	41.41%
SeqBias: CA-repeat	CACACACACA	1e-3	-8.742e+00	0.0149	1518.0	78.37%	5547.1	74.85%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-3	-8.714e+00	0.0149	1258.0	64.95%	4518.9	60.98%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-3	-8.658e+00	0.0149	588.0	30.36%	1978.1	26.69%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-3	-8.628e+00	0.0149	459.0	23.70%	1508.5	20.35%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-3	-8.405e+00	0.0149	186.0	9.60%	549.3	7.41%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-3	-8.306e+00	0.0149	698.0	36.04%	2392.4	32.28%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-8.259e+00	0.0149	578.0	29.84%	1949.9	26.31%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e-3	-8.159e+00	0.0149	163.0	8.42%	474.7	6.41%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-3	-8.042e+00	0.0156	668.0	34.49%	2286.6	30.85%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-3	-7.581e+00	0.0235	504.0	26.02%	1691.3	22.82%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e-3	-7.354e+00	0.0281	267.0	13.78%	843.6	11.38%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-3	-7.345e+00	0.0281	433.0	22.35%	1437.8	19.40%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-3	-7.306e+00	0.0281	1335.0	68.92%	4851.4	65.46%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.266e+00	0.0281	104.0	5.37%	287.4	3.88%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e-3	-7.191e+00	0.0281	192.0	9.91%	584.9	7.89%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-3	-7.153e+00	0.0281	147.0	7.59%	431.7	5.83%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-7.146e+00	0.0281	521.0	26.90%	1762.6	23.78%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-3	-7.029e+00	0.0292	295.0	15.23%	947.5	12.78%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-6.977e+00	0.0297	33.0	1.70%	69.8	0.94%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-6.945e+00	0.0297	973.0	50.23%	3460.7	46.70%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-2	-6.884e+00	0.0304	314.0	16.21%	1017.3	13.73%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-6.874e+00	0.0304	792.0	40.89%	2776.1	37.46%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-2	-6.608e+00	0.0377	570.0	29.43%	1954.1	26.37%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.592e+00	0.0377	1000.0	51.63%	3572.5	48.21%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-6.552e+00	0.0377	561.0	28.96%	1922.0	25.93%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-6.460e+00	0.0401	1396.0	72.07%	5111.4	68.97%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-2	-6.420e+00	0.0406	172.0	8.88%	525.4	7.09%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-2	-6.401e+00	0.0406	848.0	43.78%	2999.7	40.48%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-2	-6.392e+00	0.0406	1539.0	79.45%	5680.7	76.65%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-6.202e+00	0.0467	44.0	2.27%	105.8	1.43%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-2	-6.088e+00	0.0510	391.0	20.19%	1309.8	17.67%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-2	-5.948e+00	0.0573	1443.0	74.50%	5309.8	71.65%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-2	-5.946e+00	0.0573	649.0	33.51%	2263.4	30.54%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-2	-5.934e+00	0.0573	341.0	17.60%	1131.5	15.27%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-2	-5.885e+00	0.0573	367.0	18.95%	1226.2	16.55%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-2	-5.884e+00	0.0573	1401.0	72.33%	5145.2	69.43%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-5.830e+00	0.0576	417.0	21.53%	1409.0	19.01%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.823e+00	0.0576	136.0	7.02%	409.5	5.53%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-2	-5.803e+00	0.0576	317.0	16.37%	1047.1	14.13%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-2	-5.731e+00	0.0598	303.0	15.64%	998.8	13.48%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.708e+00	0.0600	1252.0	64.64%	4567.6	61.63%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-2	-5.623e+00	0.0641	430.0	22.20%	1461.6	19.72%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-2	-5.598e+00	0.0645	178.0	9.19%	557.6	7.52%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-2	-5.467e+00	0.0721	298.0	15.38%	985.8	13.30%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-2	-5.461e+00	0.0721	176.0	9.09%	552.4	7.45%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-2	-5.447e+00	0.0721	96.0	4.96%	278.4	3.76%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-2	-5.443e+00	0.0721	445.0	22.97%	1520.4	20.52%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-2	-5.414e+00	0.0721	303.0	15.64%	1004.5	13.55%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-2	-5.320e+00	0.0764	789.0	40.73%	2805.8	37.86%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e-2	-5.311e+00	0.0764	430.0	22.20%	1468.6	19.82%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-2	-5.246e+00	0.0797	234.0	12.08%	761.0	10.27%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-5.222e+00	0.0803	536.0	27.67%	1861.7	25.12%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-2	-5.127e+00	0.0869	118.0	6.09%	356.4	4.81%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-2	-5.076e+00	0.0900	297.0	15.33%	989.3	13.35%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-2	-5.065e+00	0.0900	408.0	21.06%	1393.7	18.81%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-2	-5.023e+00	0.0920	423.0	21.84%	1449.6	19.56%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-2	-5.005e+00	0.0923	1065.0	54.98%	3866.0	52.17%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-2	-4.943e+00	0.0968	122.0	6.30%	372.1	5.02%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-2	-4.917e+00	0.0978	833.0	43.00%	2983.2	40.25%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-4.878e+00	0.1002	508.0	26.23%	1766.1	23.83%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-4.858e+00	0.1009	355.0	18.33%	1204.7	16.26%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-2	-4.846e+00	0.1009	92.0	4.75%	271.0	3.66%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-4.778e+00	0.1063	33.0	1.70%	80.4	1.09%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-2	-4.760e+00	0.1067	314.0	16.21%	1057.5	14.27%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e-2	-4.753e+00	0.1067	132.0	6.81%	409.2	5.52%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e-2	-4.736e+00	0.1067	140.0	7.23%	437.2	5.90%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-4.717e+00	0.1071	519.0	26.79%	1811.4	24.44%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-4.700e+00	0.1075	524.0	27.05%	1830.9	24.70%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-4.698e+00	0.1075	1182.0	61.02%	4325.1	58.36%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-2	-4.692e+00	0.1075	448.0	23.13%	1549.9	20.91%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-2	-4.654e+00	0.1084	398.0	20.55%	1366.6	18.44%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-2	-4.651e+00	0.1084	129.0	6.66%	400.6	5.40%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-2	-4.646e+00	0.1084	1311.0	67.68%	4827.2	65.13%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-1	-4.579e+00	0.1127	239.0	12.34%	790.6	10.67%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-1	-4.575e+00	0.1127	325.0	16.78%	1101.8	14.87%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-4.569e+00	0.1127	40.0	2.07%	103.6	1.40%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-1	-4.526e+00	0.1147	93.0	4.80%	278.0	3.75%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-1	-4.508e+00	0.1154	270.0	13.94%	903.2	12.19%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-4.498e+00	0.1154	159.0	8.21%	507.7	6.85%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-1	-4.485e+00	0.1156	635.0	32.78%	2251.0	30.37%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-4.467e+00	0.1164	329.0	16.99%	1118.7	15.10%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-1	-4.458e+00	0.1164	146.0	7.54%	462.2	6.24%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-1	-4.448e+00	0.1164	123.0	6.35%	382.9	5.17%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-1	-4.427e+00	0.1172	444.0	22.92%	1541.9	20.81%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-1	-4.423e+00	0.1172	244.0	12.60%	811.6	10.95%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e-1	-4.419e+00	0.1172	288.0	14.87%	970.1	13.09%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-4.411e+00	0.1172	225.0	11.62%	743.3	10.03%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-1	-4.396e+00	0.1172	292.0	15.07%	985.7	13.30%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-4.392e+00	0.1172	634.0	32.73%	2249.9	30.36%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-1	-4.355e+00	0.1184	734.0	37.89%	2626.7	35.44%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-1	-4.344e+00	0.1186	495.0	25.55%	1732.8	23.38%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-4.339e+00	0.1186	102.0	5.27%	311.8	4.21%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-4.339e+00	0.1186	102.0	5.27%	311.8	4.21%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-4.336e+00	0.1186	613.0	31.65%	2172.9	29.32%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-1	-4.336e+00	0.1186	715.0	36.91%	2555.9	34.49%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-4.328e+00	0.1186	224.0	11.56%	741.2	10.00%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-4.283e+00	0.1189	836.0	43.16%	3014.4	40.67%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-4.219e+00	0.1256	37.0	1.91%	96.7	1.30%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-1	-4.209e+00	0.1257	154.0	7.95%	494.9	6.68%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-1	-4.204e+00	0.1257	42.0	2.17%	112.5	1.52%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-1	-4.193e+00	0.1257	183.0	9.45%	597.5	8.06%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-4.189e+00	0.1257	435.0	22.46%	1514.3	20.43%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-1	-4.189e+00	0.1257	561.0	28.96%	1982.2	26.75%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-4.135e+00	0.1294	275.0	14.20%	929.6	12.54%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-1	-4.069e+00	0.1370	400.0	20.65%	1388.0	18.73%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-1	-4.061e+00	0.1370	28.0	1.45%	69.8	0.94%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-4.044e+00	0.1382	7.0	0.36%	10.1	0.14%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-4.039e+00	0.1382	522.0	26.95%	1841.8	24.85%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-1	-4.033e+00	0.1382	76.0	3.92%	226.7	3.06%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-4.033e+00	0.1382	950.0	49.04%	3456.7	46.64%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e-1	-4.011e+00	0.1382	34.0	1.76%	88.4	1.19%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-1	-3.982e+00	0.1409	608.0	31.39%	2164.4	29.21%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-3.980e+00	0.1409	82.0	4.23%	247.2	3.34%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.974e+00	0.1409	540.0	27.88%	1910.8	25.78%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e-1	-3.971e+00	0.1409	111.0	5.73%	347.4	4.69%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-1	-3.965e+00	0.1409	1466.0	75.68%	5454.4	73.60%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.960e+00	0.1409	172.0	8.88%	562.3	7.59%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-1	-3.933e+00	0.1411	469.0	24.21%	1647.4	22.23%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-1	-3.921e+00	0.1417	147.0	7.59%	474.3	6.40%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-3.904e+00	0.1430	137.0	7.07%	439.6	5.93%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-1	-3.877e+00	0.1458	551.0	28.45%	1954.1	26.37%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-1	-3.856e+00	0.1478	181.0	9.34%	596.6	8.05%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-3.849e+00	0.1478	517.0	26.69%	1828.4	24.67%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-1	-3.819e+00	0.1510	197.0	10.17%	654.0	8.82%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-1	-3.812e+00	0.1510	416.0	21.48%	1454.0	19.62%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-1	-3.800e+00	0.1517	108.0	5.58%	339.5	4.58%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-3.789e+00	0.1522	947.0	48.89%	3453.1	46.59%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.776e+00	0.1530	503.0	25.97%	1778.5	24.00%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e-1	-3.770e+00	0.1530	14.0	0.72%	29.6	0.40%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-1	-3.764e+00	0.1530	60.0	3.10%	175.0	2.36%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.738e+00	0.1556	196.0	10.12%	652.7	8.81%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e-1	-3.734e+00	0.1556	50.0	2.58%	142.1	1.92%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-1	-3.715e+00	0.1570	257.0	13.27%	873.9	11.79%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-1	-3.673e+00	0.1626	354.0	18.28%	1229.3	16.59%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-3.657e+00	0.1642	31.0	1.60%	81.6	1.10%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.628e+00	0.1679	361.0	18.64%	1256.0	16.95%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.624e+00	0.1679	35.0	1.81%	94.0	1.27%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-3.619e+00	0.1679	1304.0	67.32%	4833.8	65.22%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-3.615e+00	0.1679	92.0	4.75%	286.3	3.86%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e-1	-3.596e+00	0.1685	116.0	5.99%	370.8	5.00%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-1	-3.596e+00	0.1685	1026.0	52.97%	3762.3	50.77%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-3.594e+00	0.1685	7.0	0.36%	11.1	0.15%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.588e+00	0.1685	358.0	18.48%	1246.8	16.82%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-1	-3.584e+00	0.1685	583.0	30.10%	2083.4	28.11%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-1	-3.568e+00	0.1685	247.0	12.75%	840.1	11.34%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e-1	-3.560e+00	0.1685	195.0	10.07%	652.0	8.80%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-1	-3.540e+00	0.1704	191.0	9.86%	638.8	8.62%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.538e+00	0.1704	707.0	36.50%	2551.0	34.42%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-1	-3.502e+00	0.1747	224.0	11.56%	758.4	10.23%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e-1	-3.493e+00	0.1752	344.0	17.76%	1197.1	16.15%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-1	-3.481e+00	0.1762	184.0	9.50%	614.1	8.29%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.474e+00	0.1763	120.0	6.20%	386.3	5.21%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.468e+00	0.1764	797.0	41.15%	2894.2	39.05%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-3.449e+00	0.1787	351.0	18.12%	1224.5	16.52%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-1	-3.407e+00	0.1853	358.0	18.48%	1251.9	16.89%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-3.396e+00	0.1861	584.0	30.15%	2093.2	28.24%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-1	-3.374e+00	0.1891	348.0	17.97%	1215.6	16.40%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-1	-3.367e+00	0.1893	76.0	3.92%	234.9	3.17%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.357e+00	0.1901	459.0	23.70%	1627.9	21.97%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-1	-3.337e+00	0.1928	381.0	19.67%	1338.6	18.06%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-1	-3.327e+00	0.1936	936.0	48.32%	3428.3	46.26%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.324e+00	0.1936	389.0	20.08%	1368.6	18.47%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-1	-3.323e+00	0.1936	554.0	28.60%	1983.1	26.76%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-1	-3.306e+00	0.1944	21.0	1.08%	52.5	0.71%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e-1	-3.304e+00	0.1944	259.0	13.37%	890.5	12.02%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.298e+00	0.1944	74.0	3.82%	228.8	3.09%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.294e+00	0.1944	237.0	12.24%	810.8	10.94%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-3.286e+00	0.1944	272.0	14.04%	938.0	12.66%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-3.282e+00	0.1944	528.0	27.26%	1887.7	25.47%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-1	-3.280e+00	0.1944	787.0	40.63%	2863.8	38.64%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-3.272e+00	0.1944	541.0	27.93%	1936.0	26.12%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-1	-3.268e+00	0.1944	335.0	17.29%	1170.2	15.79%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-1	-3.256e+00	0.1944	467.0	24.11%	1660.8	22.41%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-3.255e+00	0.1944	1031.0	53.23%	3794.0	51.19%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-1	-3.251e+00	0.1944	61.0	3.15%	184.9	2.49%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-1	-3.234e+00	0.1952	83.0	4.28%	260.1	3.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.233e+00	0.1952	120.0	6.20%	390.2	5.26%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.231e+00	0.1952	230.0	11.87%	786.3	10.61%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-1	-3.210e+00	0.1968	260.0	13.42%	896.2	12.09%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-3.201e+00	0.1975	381.0	19.67%	1342.5	18.11%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-1	-3.196e+00	0.1975	883.0	45.59%	3231.1	43.60%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e-1	-3.195e+00	0.1975	117.0	6.04%	380.1	5.13%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.192e+00	0.1975	329.0	16.99%	1150.3	15.52%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-1	-3.172e+00	0.1992	318.0	16.42%	1110.9	14.99%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.152e+00	0.2011	39.0	2.01%	111.0	1.50%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-1	-3.152e+00	0.2011	39.0	2.01%	111.7	1.51%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-1	-3.145e+00	0.2015	1021.0	52.71%	3760.5	50.74%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.118e+00	0.2060	38.0	1.96%	108.5	1.46%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.118e+00	0.2060	129.0	6.66%	425.0	5.73%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-1	-3.110e+00	0.2060	118.0	6.09%	385.0	5.20%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-3.109e+00	0.2060	26.0	1.34%	69.0	0.93%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-1	-3.101e+00	0.2060	445.0	22.97%	1583.4	21.37%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-1	-3.094e+00	0.2060	130.0	6.71%	428.4	5.78%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.075e+00	0.2087	188.0	9.71%	637.6	8.60%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-3.047e+00	0.2137	132.0	6.81%	436.2	5.89%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e-1	-3.035e+00	0.2151	289.0	14.92%	1007.5	13.59%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.030e+00	0.2151	188.0	9.71%	638.4	8.61%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-3.021e+00	0.2162	640.0	33.04%	2317.7	31.27%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-1	-3.019e+00	0.2162	376.0	19.41%	1329.6	17.94%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-1	-3.008e+00	0.2169	995.0	51.37%	3666.8	49.48%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-2.981e+00	0.2217	152.0	7.85%	509.8	6.88%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-2.977e+00	0.2217	170.0	8.78%	574.2	7.75%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-1	-2.965e+00	0.2233	249.0	12.85%	862.7	11.64%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.945e+00	0.2266	100.0	5.16%	324.4	4.38%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-2.931e+00	0.2287	47.0	2.43%	140.6	1.90%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-2.901e+00	0.2345	1248.0	64.43%	4643.2	62.65%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-1	-2.893e+00	0.2354	127.0	6.56%	421.7	5.69%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e-1	-2.888e+00	0.2355	240.0	12.39%	831.5	11.22%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-1	-2.870e+00	0.2387	163.0	8.42%	551.4	7.44%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.867e+00	0.2387	433.0	22.35%	1547.0	20.87%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.854e+00	0.2403	488.0	25.19%	1752.5	23.65%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-1	-2.849e+00	0.2404	582.0	30.05%	2105.2	28.41%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.840e+00	0.2415	1109.0	57.25%	4110.7	55.47%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.818e+00	0.2458	75.0	3.87%	238.1	3.21%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.814e+00	0.2458	222.0	11.46%	767.5	10.36%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e-1	-2.806e+00	0.2467	211.0	10.89%	727.6	9.82%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-2.805e+00	0.2467	297.0	15.33%	1043.0	14.07%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-1	-2.797e+00	0.2467	348.0	17.97%	1232.2	16.63%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.796e+00	0.2467	311.0	16.06%	1095.5	14.78%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.795e+00	0.2467	5.0	0.26%	8.8	0.12%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-2.787e+00	0.2467	43.0	2.22%	128.6	1.74%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-2.784e+00	0.2467	974.0	50.28%	3595.8	48.52%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-2.766e+00	0.2490	369.0	19.05%	1311.7	17.70%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-1	-2.742e+00	0.2538	187.0	9.65%	641.3	8.65%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-1	-2.711e+00	0.2609	667.0	34.43%	2431.5	32.81%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-1	-2.708e+00	0.2609	867.0	44.76%	3190.8	43.05%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-2.702e+00	0.2609	149.0	7.69%	504.1	6.80%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.668e+00	0.2689	167.0	8.62%	570.8	7.70%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-1	-2.666e+00	0.2689	561.0	28.96%	2033.5	27.44%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-1	-2.660e+00	0.2689	275.0	14.20%	966.4	13.04%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.655e+00	0.2689	31.0	1.60%	90.0	1.21%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-1	-2.655e+00	0.2689	31.0	1.60%	89.2	1.20%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-1	-2.651e+00	0.2689	100.0	5.16%	329.6	4.45%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-2.651e+00	0.2689	76.0	3.92%	244.5	3.30%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-1	-2.639e+00	0.2689	613.0	31.65%	2230.7	30.10%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.620e+00	0.2728	33.0	1.70%	96.5	1.30%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.583e+00	0.2819	22.0	1.14%	60.2	0.81%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-1	-2.567e+00	0.2854	37.0	1.91%	110.1	1.49%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e-1	-2.551e+00	0.2889	231.0	11.93%	807.9	10.90%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-1	-2.549e+00	0.2889	95.0	4.90%	313.8	4.23%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.547e+00	0.2889	219.0	11.31%	763.6	10.30%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.533e+00	0.2907	1038.0	53.59%	3851.2	51.97%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.524e+00	0.2921	1933.0	99.79%	7379.2	99.57%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.522e+00	0.2921	323.0	16.68%	1148.2	15.49%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-1	-2.520e+00	0.2921	149.0	7.69%	508.6	6.86%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.487e+00	0.2996	221.0	11.41%	772.2	10.42%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-1	-2.485e+00	0.2996	431.0	22.25%	1552.7	20.95%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-1	-2.463e+00	0.3044	482.0	24.88%	1744.8	23.54%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-2.454e+00	0.3059	99.0	5.11%	329.1	4.44%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.454e+00	0.3059	269.0	13.89%	950.8	12.83%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.452e+00	0.3059	224.0	11.56%	784.4	10.58%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.443e+00	0.3059	31.0	1.60%	91.7	1.24%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.435e+00	0.3072	36.0	1.86%	108.8	1.47%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-1	-2.428e+00	0.3081	223.0	11.51%	781.9	10.55%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-1	-2.421e+00	0.3089	855.0	44.14%	3157.0	42.60%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.421e+00	0.3089	91.0	4.70%	301.0	4.06%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-2.418e+00	0.3089	276.0	14.25%	977.6	13.19%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-1	-2.408e+00	0.3095	301.0	15.54%	1070.6	14.45%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-1	-2.408e+00	0.3095	967.0	49.92%	3585.2	48.38%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-1	-2.408e+00	0.3095	185.0	9.55%	642.5	8.67%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-1	-2.395e+00	0.3103	195.0	10.07%	679.8	9.17%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-1	-2.385e+00	0.3123	438.0	22.61%	1582.9	21.36%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.379e+00	0.3128	237.0	12.24%	834.9	11.27%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.378e+00	0.3128	68.0	3.51%	220.6	2.98%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-1	-2.360e+00	0.3164	168.0	8.67%	581.8	7.85%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-1	-2.358e+00	0.3164	82.0	4.23%	270.0	3.64%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-1	-2.353e+00	0.3166	427.0	22.04%	1542.1	20.81%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-2.351e+00	0.3166	230.0	11.87%	809.2	10.92%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-1	-2.343e+00	0.3173	485.0	25.04%	1760.2	23.75%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-1	-2.343e+00	0.3173	92.0	4.75%	306.5	4.14%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-1	-2.335e+00	0.3176	353.0	18.22%	1266.8	17.09%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e-1	-2.331e+00	0.3177	2.0	0.10%	2.6	0.04%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-1	-2.327e+00	0.3179	100.0	5.16%	335.7	4.53%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-1	-2.322e+00	0.3185	412.0	21.27%	1487.1	20.07%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.320e+00	0.3185	93.0	4.80%	310.0	4.18%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.306e+00	0.3214	181.0	9.34%	631.0	8.51%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-1	-2.304e+00	0.3214	75.0	3.87%	246.7	3.33%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-2.293e+00	0.3233	562.0	29.01%	2052.5	27.70%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.283e+00	0.3253	406.0	20.96%	1466.9	19.79%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.266e+00	0.3298	34.0	1.76%	103.2	1.39%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-2.259e+00	0.3309	466.0	24.06%	1692.9	22.84%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.248e+00	0.3335	384.0	19.82%	1385.4	18.69%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.235e+00	0.3366	344.0	17.76%	1236.7	16.69%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-2.224e+00	0.3391	56.0	2.89%	180.5	2.43%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.224e+00	0.3391	69.0	3.56%	226.3	3.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.219e+00	0.3391	15.0	0.77%	40.1	0.54%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-2.215e+00	0.3391	98.0	5.06%	330.6	4.46%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.214e+00	0.3391	25.0	1.29%	73.4	0.99%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.204e+00	0.3402	202.0	10.43%	710.9	9.59%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.204e+00	0.3402	37.0	1.91%	114.4	1.54%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-2.203e+00	0.3402	228.0	11.77%	806.2	10.88%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.191e+00	0.3412	335.0	17.29%	1204.9	16.26%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-2.186e+00	0.3419	191.0	9.86%	670.1	9.04%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-2.184e+00	0.3419	18.0	0.93%	50.8	0.69%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-2.177e+00	0.3427	352.0	18.17%	1268.2	17.11%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.162e+00	0.3470	239.0	12.34%	848.6	11.45%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.133e+00	0.3558	138.0	7.12%	477.7	6.45%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.112e+00	0.3623	185.0	9.55%	650.8	8.78%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.088e+00	0.3697	261.0	13.47%	932.6	12.58%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.081e+00	0.3712	656.0	33.87%	2417.4	32.62%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.078e+00	0.3712	139.0	7.18%	482.5	6.51%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.068e+00	0.3737	59.0	3.05%	193.5	2.61%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-2.061e+00	0.3749	180.0	9.29%	633.2	8.54%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-2.058e+00	0.3752	21.0	1.08%	61.5	0.83%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.056e+00	0.3752	498.0	25.71%	1821.6	24.58%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.055e+00	0.3752	200.0	10.33%	707.4	9.55%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.042e+00	0.3774	392.0	20.24%	1423.0	19.20%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.040e+00	0.3774	637.0	32.89%	2347.2	31.67%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-2.039e+00	0.3774	47.0	2.43%	151.4	2.04%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.036e+00	0.3774	246.0	12.70%	878.7	11.86%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-2.035e+00	0.3774	41.0	2.12%	130.2	1.76%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-2.033e+00	0.3774	498.0	25.71%	1822.2	24.59%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.033e+00	0.3774	236.0	12.18%	841.5	11.36%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-2.032e+00	0.3774	481.0	24.83%	1758.8	23.73%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.024e+00	0.3774	177.0	9.14%	623.6	8.41%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-2.014e+00	0.3775	292.0	15.07%	1050.1	14.17%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.011e+00	0.3775	373.0	19.26%	1353.5	18.26%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-2.003e+00	0.3792	91.0	4.70%	309.6	4.18%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.999e+00	0.3797	483.0	24.94%	1768.0	23.86%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.997e+00	0.3797	76.0	3.92%	255.1	3.44%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.993e+00	0.3797	244.0	12.60%	872.5	11.77%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.993e+00	0.3797	380.0	19.62%	1380.9	18.63%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.988e+00	0.3797	722.0	37.27%	2673.0	36.07%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-1.987e+00	0.3797	630.0	32.52%	2323.5	31.35%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.986e+00	0.3797	369.0	19.05%	1339.6	18.08%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.982e+00	0.3797	300.0	15.49%	1081.4	14.59%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.981e+00	0.3797	67.0	3.46%	223.8	3.02%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.979e+00	0.3797	51.0	2.63%	166.3	2.24%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.972e+00	0.3797	243.0	12.55%	869.3	11.73%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.964e+00	0.3805	401.0	20.70%	1460.2	19.70%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.955e+00	0.3827	73.0	3.77%	245.6	3.31%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-1.955e+00	0.3827	91.0	4.70%	310.5	4.19%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.949e+00	0.3830	253.0	13.06%	907.7	12.25%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.948e+00	0.3830	286.0	14.77%	1030.2	13.90%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.943e+00	0.3830	626.0	32.32%	2310.7	31.18%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-1.939e+00	0.3835	422.0	21.79%	1540.9	20.79%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.938e+00	0.3835	48.0	2.48%	156.8	2.12%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-1.938e+00	0.3835	535.0	27.62%	1966.6	26.54%
Tal1	CATCTG	1e0	-1.935e+00	0.3835	431.0	22.25%	1574.9	21.25%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.935e+00	0.3835	3.0	0.15%	5.3	0.07%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.930e+00	0.3835	213.0	11.00%	759.2	10.24%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.921e+00	0.3835	660.0	34.07%	2440.3	32.93%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.920e+00	0.3835	380.0	19.62%	1383.6	18.67%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.919e+00	0.3835	348.0	17.97%	1263.6	17.05%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.908e+00	0.3855	644.0	33.25%	2380.9	32.13%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.902e+00	0.3864	538.0	27.77%	1979.9	26.72%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.898e+00	0.3869	481.0	24.83%	1764.8	23.81%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.896e+00	0.3869	17.0	0.88%	49.7	0.67%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.890e+00	0.3879	707.0	36.50%	2620.1	35.35%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.882e+00	0.3901	35.0	1.81%	111.4	1.50%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.877e+00	0.3908	82.0	4.23%	279.4	3.77%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.870e+00	0.3927	96.0	4.96%	330.4	4.46%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-1.868e+00	0.3927	831.0	42.90%	3093.4	41.74%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.864e+00	0.3928	217.0	11.20%	776.7	10.48%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-1.851e+00	0.3968	522.0	26.95%	1921.1	25.92%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.844e+00	0.3985	133.0	6.87%	466.7	6.30%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.843e+00	0.3985	115.0	5.94%	400.6	5.41%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.833e+00	0.4008	342.0	17.66%	1244.5	16.79%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.833e+00	0.4008	291.0	15.02%	1053.6	14.22%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.824e+00	0.4020	52.0	2.68%	172.8	2.33%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.823e+00	0.4020	43.0	2.22%	140.0	1.89%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-1.821e+00	0.4020	715.0	36.91%	2654.6	35.82%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-1.819e+00	0.4020	88.0	4.54%	302.8	4.09%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-1.808e+00	0.4042	192.0	9.91%	685.9	9.26%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-1.808e+00	0.4042	165.0	8.52%	585.5	7.90%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.808e+00	0.4042	5.0	0.26%	11.5	0.16%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.806e+00	0.4042	272.0	14.04%	983.4	13.27%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.804e+00	0.4042	426.0	21.99%	1561.9	21.08%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.795e+00	0.4042	717.0	37.02%	2663.3	35.94%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.790e+00	0.4050	194.0	10.02%	693.6	9.36%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.790e+00	0.4050	107.0	5.52%	372.2	5.02%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-1.772e+00	0.4104	373.0	19.26%	1363.1	18.39%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-1.771e+00	0.4104	1028.0	53.07%	3851.7	51.97%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.770e+00	0.4104	490.0	25.30%	1804.1	24.34%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-1.762e+00	0.4111	112.0	5.78%	391.8	5.29%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.754e+00	0.4136	144.0	7.43%	509.7	6.88%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-1.736e+00	0.4198	71.0	3.67%	242.7	3.28%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.734e+00	0.4198	471.0	24.32%	1735.0	23.41%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.714e+00	0.4271	498.0	25.71%	1837.1	24.79%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.696e+00	0.4334	586.0	30.25%	2171.9	29.31%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.692e+00	0.4344	34.0	1.76%	110.4	1.49%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.689e+00	0.4344	174.0	8.98%	622.0	8.39%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.684e+00	0.4356	24.0	1.24%	75.6	1.02%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.684e+00	0.4356	433.0	22.35%	1593.2	21.50%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-1.682e+00	0.4356	26.0	1.34%	82.1	1.11%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.669e+00	0.4387	246.0	12.70%	891.9	12.03%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.651e+00	0.4457	1423.0	73.46%	5377.7	72.56%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.640e+00	0.4494	11.0	0.57%	32.0	0.43%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-1.638e+00	0.4494	45.0	2.32%	150.6	2.03%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.630e+00	0.4516	458.0	23.64%	1690.5	22.81%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.616e+00	0.4570	399.0	20.60%	1468.2	19.81%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-1.614e+00	0.4570	165.0	8.52%	591.7	7.98%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.606e+00	0.4590	236.0	12.18%	856.8	11.56%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.593e+00	0.4639	215.0	11.10%	778.9	10.51%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.592e+00	0.4639	331.0	17.09%	1213.8	16.38%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.589e+00	0.4639	47.0	2.43%	158.3	2.14%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.589e+00	0.4639	689.0	35.57%	2568.9	34.66%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.588e+00	0.4639	1171.0	60.45%	4410.1	59.51%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-1.583e+00	0.4639	224.0	11.56%	812.2	10.96%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.563e+00	0.4713	469.0	24.21%	1735.9	23.42%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.560e+00	0.4713	36.0	1.86%	119.0	1.61%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.559e+00	0.4713	113.0	5.83%	400.3	5.40%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-1.557e+00	0.4713	51.0	2.63%	173.3	2.34%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.555e+00	0.4713	4.0	0.21%	9.1	0.12%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.555e+00	0.4713	4.0	0.21%	9.1	0.12%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.550e+00	0.4713	9.0	0.46%	26.0	0.35%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-1.530e+00	0.4788	42.0	2.17%	141.5	1.91%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.520e+00	0.4825	674.0	34.80%	2515.4	33.94%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.520e+00	0.4825	371.0	19.15%	1367.1	18.45%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.487e+00	0.4965	219.0	11.31%	797.8	10.77%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.480e+00	0.4987	163.0	8.42%	588.5	7.94%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-1.479e+00	0.4987	834.0	43.06%	3127.2	42.20%
SeqBias: TA-repeat	TATATATATA	1e0	-1.478e+00	0.4987	878.0	45.33%	3295.7	44.47%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.477e+00	0.4987	25.0	1.29%	81.9	1.11%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.477e+00	0.4987	25.0	1.29%	81.3	1.10%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-1.457e+00	0.5042	35.0	1.81%	117.3	1.58%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.457e+00	0.5042	260.0	13.42%	952.9	12.86%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.456e+00	0.5042	345.0	17.81%	1272.6	17.17%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.446e+00	0.5059	54.0	2.79%	187.0	2.52%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.446e+00	0.5059	707.0	36.50%	2645.5	35.70%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.442e+00	0.5060	60.0	3.10%	208.1	2.81%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.435e+00	0.5082	41.0	2.12%	139.4	1.88%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-1.434e+00	0.5082	154.0	7.95%	556.6	7.51%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.431e+00	0.5082	590.0	30.46%	2201.7	29.71%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-1.426e+00	0.5092	144.0	7.43%	519.1	7.01%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.419e+00	0.5118	242.0	12.49%	886.6	11.96%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.405e+00	0.5178	563.0	29.07%	2100.5	28.34%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.401e+00	0.5186	326.0	16.83%	1203.9	16.25%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-1.398e+00	0.5188	213.0	11.00%	778.2	10.50%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-1.392e+00	0.5209	409.0	21.12%	1517.3	20.47%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.388e+00	0.5216	281.0	14.51%	1034.3	13.96%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.388e+00	0.5216	573.0	29.58%	2139.4	28.87%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.386e+00	0.5216	76.0	3.92%	268.2	3.62%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-1.381e+00	0.5220	852.0	43.99%	3202.8	43.22%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.376e+00	0.5232	292.0	15.07%	1076.1	14.52%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.375e+00	0.5232	13.0	0.67%	40.1	0.54%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-1.375e+00	0.5232	13.0	0.67%	41.0	0.55%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-1.372e+00	0.5232	1205.0	62.21%	4554.9	61.46%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.369e+00	0.5232	534.0	27.57%	1992.9	26.89%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-1.367e+00	0.5232	31.0	1.60%	104.4	1.41%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.365e+00	0.5232	163.0	8.42%	592.0	7.99%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-1.365e+00	0.5232	5.0	0.26%	13.0	0.18%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-1.361e+00	0.5232	78.0	4.03%	276.2	3.73%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-1.356e+00	0.5232	149.0	7.69%	540.5	7.29%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.356e+00	0.5232	628.0	32.42%	2350.5	31.72%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.355e+00	0.5232	305.0	15.75%	1126.0	15.19%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.351e+00	0.5232	457.0	23.59%	1701.6	22.96%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.349e+00	0.5232	22.0	1.14%	72.5	0.98%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.340e+00	0.5262	353.0	18.22%	1308.0	17.65%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.335e+00	0.5273	354.0	18.28%	1312.6	17.71%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-1.333e+00	0.5274	58.0	2.99%	203.7	2.75%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-1.332e+00	0.5274	55.0	2.84%	192.7	2.60%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.329e+00	0.5274	188.0	9.71%	687.6	9.28%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.323e+00	0.5291	142.0	7.33%	515.8	6.96%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.318e+00	0.5306	59.0	3.05%	207.7	2.80%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.318e+00	0.5306	206.0	10.64%	755.1	10.19%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-1.316e+00	0.5306	227.0	11.72%	834.3	11.26%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.312e+00	0.5308	89.0	4.59%	318.6	4.30%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.312e+00	0.5308	36.0	1.86%	123.1	1.66%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.309e+00	0.5308	66.0	3.41%	233.1	3.15%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.307e+00	0.5308	237.0	12.24%	872.3	11.77%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.307e+00	0.5308	347.0	17.91%	1287.7	17.38%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-1.292e+00	0.5353	150.0	7.74%	547.0	7.38%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.292e+00	0.5353	116.0	5.99%	419.2	5.66%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-1.290e+00	0.5353	135.0	6.97%	490.9	6.62%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.288e+00	0.5353	29.0	1.50%	98.6	1.33%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.284e+00	0.5353	17.0	0.88%	55.2	0.74%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.284e+00	0.5353	437.0	22.56%	1629.2	21.98%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.283e+00	0.5353	3.0	0.15%	8.0	0.11%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.276e+00	0.5365	226.0	11.67%	832.4	11.23%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.275e+00	0.5365	205.0	10.58%	753.8	10.17%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-1.272e+00	0.5365	189.0	9.76%	693.4	9.36%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.271e+00	0.5365	56.0	2.89%	197.1	2.66%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.270e+00	0.5365	53.0	2.74%	186.7	2.52%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.270e+00	0.5365	2.0	0.10%	4.1	0.06%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.256e+00	0.5403	77.0	3.98%	275.5	3.72%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.244e+00	0.5456	153.0	7.90%	559.8	7.55%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-1.243e+00	0.5456	294.0	15.18%	1090.3	14.71%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.242e+00	0.5456	31.0	1.60%	106.6	1.44%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.238e+00	0.5457	34.0	1.76%	117.4	1.58%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.227e+00	0.5503	244.0	12.60%	902.6	12.18%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.226e+00	0.5503	66.0	3.41%	235.0	3.17%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.224e+00	0.5503	8.0	0.41%	24.7	0.33%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.219e+00	0.5514	84.0	4.34%	302.6	4.08%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.218e+00	0.5514	95.0	4.90%	343.2	4.63%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.217e+00	0.5514	41.0	2.12%	143.7	1.94%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.210e+00	0.5534	64.0	3.30%	228.1	3.08%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.197e+00	0.5592	198.0	10.22%	730.4	9.86%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.196e+00	0.5592	105.0	5.42%	381.9	5.15%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.188e+00	0.5623	15.0	0.77%	49.7	0.67%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.184e+00	0.5630	43.0	2.22%	151.2	2.04%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.176e+00	0.5666	13.0	0.67%	42.7	0.58%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.172e+00	0.5680	490.0	25.30%	1837.6	24.80%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.170e+00	0.5680	136.0	7.02%	498.3	6.72%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.165e+00	0.5693	467.0	24.11%	1750.8	23.62%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.162e+00	0.5699	125.0	6.45%	457.6	6.17%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-1.159e+00	0.5706	83.0	4.28%	300.9	4.06%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.158e+00	0.5706	102.0	5.27%	371.6	5.01%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-1.146e+00	0.5756	257.0	13.27%	955.5	12.89%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.143e+00	0.5763	70.0	3.61%	252.2	3.40%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.142e+00	0.5763	108.0	5.58%	394.7	5.33%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.138e+00	0.5773	14.0	0.72%	46.9	0.63%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.130e+00	0.5804	90.0	4.65%	327.2	4.41%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.126e+00	0.5817	31.0	1.60%	108.5	1.46%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.126e+00	0.5817	28.0	1.45%	97.7	1.32%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.122e+00	0.5818	44.0	2.27%	157.0	2.12%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.117e+00	0.5836	196.0	10.12%	726.6	9.80%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.110e+00	0.5867	66.0	3.41%	238.6	3.22%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.104e+00	0.5887	911.0	47.03%	3447.5	46.52%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-1.104e+00	0.5887	15.0	0.77%	50.0	0.67%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-1.104e+00	0.5887	1078.0	55.65%	4087.0	55.15%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.102e+00	0.5887	208.0	10.74%	772.3	10.42%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-1.095e+00	0.5899	36.0	1.86%	127.7	1.72%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.087e+00	0.5934	27.0	1.39%	94.6	1.28%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.076e+00	0.5988	351.0	18.12%	1315.8	17.75%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.076e+00	0.5988	62.0	3.20%	224.5	3.03%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.074e+00	0.5988	16.0	0.83%	54.8	0.74%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.072e+00	0.5988	139.0	7.18%	513.0	6.92%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.072e+00	0.5988	152.0	7.85%	562.2	7.59%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.072e+00	0.5988	367.0	18.95%	1376.2	18.57%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.071e+00	0.5988	372.0	19.20%	1396.0	18.84%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.067e+00	0.5988	86.0	4.44%	314.1	4.24%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.064e+00	0.5988	258.0	13.32%	963.7	13.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.063e+00	0.5988	67.0	3.46%	243.5	3.29%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.053e+00	0.6011	151.0	7.80%	559.4	7.55%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.053e+00	0.6011	205.0	10.58%	763.4	10.30%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.051e+00	0.6011	495.0	25.55%	1864.0	25.15%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-1.047e+00	0.6017	50.0	2.58%	180.1	2.43%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-1.035e+00	0.6075	78.0	4.03%	285.5	3.85%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.034e+00	0.6075	5.0	0.26%	15.2	0.21%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.034e+00	0.6075	660.0	34.07%	2494.1	33.65%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.025e+00	0.6103	41.0	2.12%	147.2	1.99%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.020e+00	0.6123	180.0	9.29%	671.0	9.05%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.017e+00	0.6129	101.0	5.21%	372.1	5.02%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.009e+00	0.6168	46.0	2.37%	166.3	2.24%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-1.003e+00	0.6194	445.0	22.97%	1677.1	22.63%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-9.975e-01	0.6216	104.0	5.37%	384.6	5.19%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-9.919e-01	0.6240	372.0	19.20%	1400.5	18.90%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.849e-01	0.6272	56.0	2.89%	204.7	2.76%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.797e-01	0.6294	129.0	6.66%	479.6	6.47%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-9.770e-01	0.6299	125.0	6.45%	464.5	6.27%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-9.761e-01	0.6299	185.0	9.55%	691.2	9.33%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-9.712e-01	0.6313	313.0	16.16%	1177.6	15.89%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-9.699e-01	0.6313	91.0	4.70%	336.8	4.54%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-9.683e-01	0.6313	385.0	19.88%	1451.3	19.58%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-9.656e-01	0.6314	260.0	13.42%	977.0	13.18%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-9.643e-01	0.6314	141.0	7.28%	525.0	7.08%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-9.549e-01	0.6359	32.0	1.65%	115.0	1.55%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.504e-01	0.6376	64.0	3.30%	235.3	3.17%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-9.411e-01	0.6424	262.0	13.53%	985.1	13.29%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-9.289e-01	0.6491	425.0	21.94%	1606.2	21.67%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-9.220e-01	0.6525	339.0	17.50%	1279.0	17.26%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-9.181e-01	0.6539	330.0	17.04%	1245.2	16.80%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-9.169e-01	0.6539	229.0	11.82%	861.5	11.62%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-9.128e-01	0.6550	24.0	1.24%	86.4	1.17%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-9.094e-01	0.6561	28.0	1.45%	101.2	1.37%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.076e-01	0.6561	32.0	1.65%	116.9	1.58%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-9.060e-01	0.6561	120.0	6.20%	449.0	6.06%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-8.986e-01	0.6597	25.0	1.29%	90.2	1.22%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-8.986e-01	0.6597	1.0	0.05%	2.8	0.04%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-8.889e-01	0.6638	133.0	6.87%	498.3	6.72%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-8.846e-01	0.6655	64.0	3.30%	237.4	3.20%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.813e-01	0.6666	125.0	6.45%	468.3	6.32%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-8.762e-01	0.6688	39.0	2.01%	143.3	1.93%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-8.722e-01	0.6703	12.0	0.62%	42.4	0.57%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-8.631e-01	0.6752	344.0	17.76%	1302.6	17.58%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.614e-01	0.6753	313.0	16.16%	1184.1	15.98%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-8.582e-01	0.6762	6.0	0.31%	20.3	0.27%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-8.569e-01	0.6762	341.0	17.60%	1291.5	17.43%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-8.477e-01	0.6810	17.0	0.88%	61.4	0.83%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-8.425e-01	0.6833	75.0	3.87%	280.2	3.78%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.359e-01	0.6868	191.0	9.86%	721.3	9.73%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-8.271e-01	0.6916	178.0	9.19%	672.8	9.08%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-8.231e-01	0.6932	36.0	1.86%	134.0	1.81%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-8.227e-01	0.6932	103.0	5.32%	387.1	5.22%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-8.202e-01	0.6932	248.0	12.80%	939.7	12.68%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-8.187e-01	0.6932	291.0	15.02%	1103.5	14.89%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-8.131e-01	0.6954	100.0	5.16%	376.3	5.08%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-8.093e-01	0.6969	71.0	3.67%	266.8	3.60%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-8.047e-01	0.6989	62.0	3.20%	232.7	3.14%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-8.035e-01	0.6989	275.0	14.20%	1043.2	14.08%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-7.995e-01	0.7002	298.0	15.38%	1131.4	15.27%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-7.981e-01	0.7002	68.0	3.51%	255.6	3.45%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.932e-01	0.7022	209.0	10.79%	792.2	10.69%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-7.927e-01	0.7022	84.0	4.34%	316.1	4.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-7.887e-01	0.7030	17.0	0.88%	62.5	0.84%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-7.843e-01	0.7049	1937.0	100.00%	7408.9	99.97%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.816e-01	0.7057	398.0	20.55%	1514.3	20.43%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-7.804e-01	0.7057	9.0	0.46%	32.6	0.44%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-7.796e-01	0.7057	144.0	7.43%	545.3	7.36%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-7.778e-01	0.7057	87.0	4.49%	328.9	4.44%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-7.769e-01	0.7057	32.0	1.65%	119.0	1.61%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-7.762e-01	0.7057	18.0	0.93%	66.0	0.89%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-7.737e-01	0.7057	275.0	14.20%	1045.5	14.11%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-7.698e-01	0.7058	68.0	3.51%	256.9	3.47%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.694e-01	0.7058	14.0	0.72%	51.3	0.69%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-7.654e-01	0.7065	539.0	27.83%	2054.0	27.72%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-7.566e-01	0.7116	6.0	0.31%	21.6	0.29%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-7.487e-01	0.7161	104.0	5.37%	394.7	5.33%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-7.388e-01	0.7220	58.0	2.99%	219.3	2.96%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-7.382e-01	0.7220	112.0	5.78%	425.3	5.74%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-7.331e-01	0.7237	12.0	0.62%	44.2	0.60%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-7.323e-01	0.7237	130.0	6.71%	495.0	6.68%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-7.322e-01	0.7237	213.0	11.00%	811.4	10.95%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-7.244e-01	0.7265	160.0	8.26%	609.4	8.22%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-7.234e-01	0.7265	3.0	0.15%	10.3	0.14%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-7.207e-01	0.7268	13.0	0.67%	48.2	0.65%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.204e-01	0.7268	89.0	4.59%	338.3	4.56%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.179e-01	0.7268	297.0	15.33%	1133.1	15.29%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-7.176e-01	0.7268	207.0	10.69%	789.3	10.65%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.168e-01	0.7268	354.0	18.28%	1351.8	18.24%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-7.122e-01	0.7272	30.0	1.55%	113.3	1.53%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.095e-01	0.7280	14.0	0.72%	52.9	0.71%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.989e-01	0.7346	288.0	14.87%	1100.4	14.85%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-6.926e-01	0.7380	73.0	3.77%	279.0	3.76%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.908e-01	0.7382	452.0	23.34%	1728.7	23.33%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-6.880e-01	0.7390	22.0	1.14%	83.5	1.13%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-6.840e-01	0.7408	352.0	18.17%	1346.2	18.16%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.832e-01	0.7408	191.0	9.86%	730.7	9.86%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-6.805e-01	0.7410	23.0	1.19%	87.6	1.18%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-6.733e-01	0.7452	48.0	2.48%	183.8	2.48%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.683e-01	0.7478	61.0	3.15%	233.3	3.15%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.663e-01	0.7481	6.0	0.31%	22.2	0.30%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.600e-01	0.7517	75.0	3.87%	287.7	3.88%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.592e-01	0.7517	57.0	2.94%	218.8	2.95%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-6.557e-01	0.7525	627.0	32.37%	2401.1	32.40%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-6.536e-01	0.7529	14.0	0.72%	53.2	0.72%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-6.480e-01	0.7560	434.0	22.41%	1663.6	22.45%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-6.446e-01	0.7573	8.0	0.41%	30.0	0.41%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-6.419e-01	0.7582	213.0	11.00%	817.3	11.03%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-6.386e-01	0.7595	16.0	0.83%	61.9	0.84%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-6.368e-01	0.7597	257.0	13.27%	986.0	13.30%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-6.287e-01	0.7647	121.0	6.25%	465.3	6.28%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-6.266e-01	0.7651	25.0	1.29%	96.5	1.30%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-6.183e-01	0.7703	93.0	4.80%	358.7	4.84%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.155e-01	0.7712	81.0	4.18%	313.0	4.22%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.144e-01	0.7712	55.0	2.84%	212.4	2.87%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.074e-01	0.7751	50.0	2.58%	193.3	2.61%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.043e-01	0.7763	104.0	5.37%	401.5	5.42%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-6.014e-01	0.7774	30.0	1.55%	116.9	1.58%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-5.995e-01	0.7777	59.0	3.05%	228.1	3.08%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-5.950e-01	0.7800	184.0	9.50%	709.7	9.58%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-5.946e-01	0.7800	39.0	2.01%	151.1	2.04%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-5.946e-01	0.7800	39.0	2.01%	151.6	2.05%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-5.925e-01	0.7800	32.0	1.65%	124.9	1.69%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-5.903e-01	0.7800	122.0	6.30%	471.3	6.36%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.883e-01	0.7800	33.0	1.70%	128.2	1.73%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-5.857e-01	0.7801	17.0	0.88%	66.8	0.90%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-5.808e-01	0.7827	203.0	10.48%	783.5	10.57%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.805e-01	0.7827	303.0	15.64%	1167.7	15.76%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-5.727e-01	0.7867	9.0	0.46%	35.1	0.47%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-5.716e-01	0.7867	29.0	1.50%	113.6	1.53%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-5.714e-01	0.7867	116.0	5.99%	450.0	6.07%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-5.658e-01	0.7885	311.0	16.06%	1200.0	16.19%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-5.643e-01	0.7886	77.0	3.98%	299.4	4.04%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-5.620e-01	0.7892	106.0	5.47%	411.5	5.55%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-5.594e-01	0.7901	64.0	3.30%	250.0	3.37%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-5.522e-01	0.7946	151.0	7.80%	585.5	7.90%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.497e-01	0.7954	276.0	14.25%	1066.2	14.39%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-5.467e-01	0.7966	458.0	23.64%	1765.2	23.82%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.419e-01	0.7992	274.0	14.15%	1059.6	14.30%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.392e-01	0.8002	157.0	8.11%	609.8	8.23%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-5.392e-01	0.8002	18.0	0.93%	71.9	0.97%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-5.384e-01	0.8002	79.0	4.08%	308.3	4.16%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-5.359e-01	0.8002	19.0	0.98%	75.6	1.02%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.316e-01	0.8015	773.0	39.91%	2974.6	40.14%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-5.234e-01	0.8069	34.0	1.76%	135.0	1.82%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-5.229e-01	0.8069	158.0	8.16%	614.3	8.29%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.223e-01	0.8069	130.0	6.71%	506.7	6.84%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-5.189e-01	0.8070	556.0	28.70%	2144.4	28.93%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.170e-01	0.8073	295.0	15.23%	1142.8	15.42%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-5.161e-01	0.8073	302.0	15.59%	1169.4	15.78%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-5.159e-01	0.8073	111.0	5.73%	433.5	5.85%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-5.129e-01	0.8073	5.0	0.26%	20.6	0.28%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-5.084e-01	0.8096	4.0	0.21%	16.3	0.22%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-5.082e-01	0.8096	107.0	5.52%	418.2	5.64%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.035e-01	0.8112	69.0	3.56%	271.1	3.66%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.025e-01	0.8112	330.0	17.04%	1278.4	17.25%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.960e-01	0.8149	143.0	7.38%	558.3	7.53%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-4.888e-01	0.8196	176.0	9.09%	686.0	9.26%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.877e-01	0.8196	219.0	11.31%	852.3	11.50%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-4.856e-01	0.8199	315.0	16.26%	1222.1	16.49%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-4.856e-01	0.8199	25.0	1.29%	100.9	1.36%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.835e-01	0.8199	26.0	1.34%	104.1	1.40%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-4.782e-01	0.8223	273.0	14.09%	1061.4	14.32%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-4.733e-01	0.8252	83.0	4.28%	327.1	4.41%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-4.711e-01	0.8258	179.0	9.24%	699.1	9.43%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.645e-01	0.8289	10.0	0.52%	41.8	0.56%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-4.645e-01	0.8289	10.0	0.52%	41.8	0.56%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-4.628e-01	0.8292	344.0	17.76%	1336.9	18.04%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-4.577e-01	0.8322	238.0	12.29%	928.9	12.53%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-4.562e-01	0.8322	92.0	4.75%	363.1	4.90%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.549e-01	0.8322	135.0	6.97%	530.9	7.16%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-4.532e-01	0.8324	42.0	2.17%	168.3	2.27%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-4.494e-01	0.8344	200.0	10.33%	782.5	10.56%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-4.463e-01	0.8358	46.0	2.37%	184.3	2.49%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-4.405e-01	0.8395	35.0	1.81%	141.3	1.91%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-4.347e-01	0.8432	254.0	13.11%	992.1	13.39%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.334e-01	0.8432	4.0	0.21%	17.9	0.24%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-4.330e-01	0.8432	1.0	0.05%	4.2	0.06%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-4.330e-01	0.8432	1.0	0.05%	4.2	0.06%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.308e-01	0.8432	78.0	4.03%	310.9	4.19%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.292e-01	0.8432	79.0	4.08%	314.6	4.25%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.278e-01	0.8432	21.0	1.08%	86.9	1.17%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-4.275e-01	0.8432	15.0	0.77%	62.3	0.84%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.274e-01	0.8432	44.0	2.27%	177.7	2.40%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-4.273e-01	0.8432	22.0	1.14%	90.0	1.21%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.257e-01	0.8432	275.0	14.20%	1074.7	14.50%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-4.251e-01	0.8432	261.0	13.47%	1020.8	13.77%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-4.183e-01	0.8432	86.0	4.44%	342.2	4.62%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.182e-01	0.8432	33.0	1.70%	134.2	1.81%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.139e-01	0.8442	37.0	1.91%	150.8	2.03%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-4.119e-01	0.8447	234.0	12.08%	917.2	12.38%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-4.060e-01	0.8485	261.0	13.47%	1022.8	13.80%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-3.917e-01	0.8595	387.0	19.98%	1510.5	20.38%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.910e-01	0.8595	57.0	2.94%	230.8	3.11%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.881e-01	0.8603	41.0	2.12%	167.4	2.26%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-3.819e-01	0.8645	11.0	0.57%	47.5	0.64%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.813e-01	0.8645	289.0	14.92%	1133.9	15.30%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-3.812e-01	0.8645	195.0	10.07%	769.7	10.39%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-3.809e-01	0.8645	49.0	2.53%	199.9	2.70%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-3.776e-01	0.8645	10.0	0.52%	43.7	0.59%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.721e-01	0.8670	110.0	5.68%	440.0	5.94%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-3.682e-01	0.8692	40.0	2.07%	164.3	2.22%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.676e-01	0.8692	41.0	2.12%	168.2	2.27%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-3.667e-01	0.8692	302.0	15.59%	1185.8	16.00%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-3.662e-01	0.8692	104.0	5.37%	416.2	5.62%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-3.623e-01	0.8696	49.0	2.53%	200.7	2.71%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-3.616e-01	0.8696	50.0	2.58%	204.8	2.76%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.537e-01	0.8748	13.0	0.67%	56.7	0.77%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.491e-01	0.8776	30.0	1.55%	125.9	1.70%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.491e-01	0.8776	37.0	1.91%	153.8	2.08%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.464e-01	0.8776	69.0	3.56%	280.6	3.79%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.450e-01	0.8776	23.0	1.19%	98.0	1.32%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.426e-01	0.8776	21.0	1.08%	89.7	1.21%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.426e-01	0.8776	21.0	1.08%	89.6	1.21%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.426e-01	0.8776	21.0	1.08%	89.6	1.21%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.350e-01	0.8817	302.0	15.59%	1189.0	16.04%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-3.331e-01	0.8822	9.0	0.46%	40.5	0.55%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.294e-01	0.8843	39.0	2.01%	162.8	2.20%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-3.271e-01	0.8852	393.0	20.29%	1542.1	20.81%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-3.259e-01	0.8852	14.0	0.72%	61.8	0.83%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-3.259e-01	0.8852	14.0	0.72%	61.3	0.83%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-3.234e-01	0.8852	25.0	1.29%	106.3	1.43%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-3.168e-01	0.8896	70.0	3.61%	286.3	3.86%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-3.131e-01	0.8917	157.0	8.11%	628.1	8.48%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-3.113e-01	0.8921	46.0	2.37%	191.4	2.58%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-3.112e-01	0.8921	40.0	2.07%	167.5	2.26%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-3.111e-01	0.8921	48.0	2.48%	199.8	2.70%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-3.096e-01	0.8921	220.0	11.36%	874.6	11.80%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.070e-01	0.8921	340.0	17.55%	1340.3	18.09%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-3.030e-01	0.8937	6.0	0.31%	28.7	0.39%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-2.981e-01	0.8969	185.0	9.55%	739.3	9.98%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.973e-01	0.8969	225.0	11.62%	895.8	12.09%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-2.950e-01	0.8974	45.0	2.32%	188.3	2.54%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-2.927e-01	0.8982	37.0	1.91%	156.6	2.11%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-2.909e-01	0.8986	34.0	1.76%	144.6	1.95%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.887e-01	0.8995	466.0	24.06%	1830.5	24.70%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.851e-01	0.9016	28.0	1.45%	120.1	1.62%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.839e-01	0.9016	134.0	6.92%	541.6	7.31%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.830e-01	0.9016	17.0	0.88%	75.8	1.02%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.824e-01	0.9016	122.0	6.30%	494.5	6.67%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-2.802e-01	0.9016	246.0	12.70%	979.7	13.22%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-2.800e-01	0.9016	49.0	2.53%	205.7	2.78%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-2.799e-01	0.9016	58.0	2.99%	242.0	3.27%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-2.795e-01	0.9016	46.0	2.37%	193.6	2.61%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-2.776e-01	0.9016	96.0	4.96%	392.5	5.30%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-2.702e-01	0.9045	200.0	10.33%	801.2	10.81%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.669e-01	0.9063	96.0	4.96%	393.6	5.31%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-2.665e-01	0.9063	19.0	0.98%	84.7	1.14%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-2.656e-01	0.9063	9.0	0.46%	42.3	0.57%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-2.633e-01	0.9063	43.0	2.22%	183.0	2.47%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.632e-01	0.9063	18.0	0.93%	80.9	1.09%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-2.629e-01	0.9063	177.0	9.14%	712.9	9.62%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-2.614e-01	0.9063	1937.0	100.00%	7410.4	99.99%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-2.614e-01	0.9063	1937.0	100.00%	7411.1	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	-2.614e-01	0.9063	1937.0	100.00%	7411.1	100.00%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-2.599e-01	0.9063	204.0	10.53%	818.3	11.04%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.566e-01	0.9063	23.0	1.19%	102.0	1.38%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-2.562e-01	0.9063	97.0	5.01%	398.9	5.38%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-2.469e-01	0.9106	165.0	8.52%	667.9	9.01%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.451e-01	0.9111	168.0	8.67%	679.1	9.16%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-2.425e-01	0.9123	25.0	1.29%	110.7	1.49%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.412e-01	0.9123	76.0	3.92%	316.3	4.27%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-2.407e-01	0.9123	34.0	1.76%	147.8	1.99%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.403e-01	0.9123	163.0	8.42%	660.1	8.91%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.393e-01	0.9123	115.0	5.94%	471.1	6.36%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-2.383e-01	0.9123	49.0	2.53%	208.5	2.81%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-2.336e-01	0.9135	16.0	0.83%	73.2	0.99%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-2.312e-01	0.9146	134.0	6.92%	547.1	7.38%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-2.296e-01	0.9150	27.0	1.39%	119.5	1.61%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-2.261e-01	0.9170	50.0	2.58%	213.1	2.88%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.245e-01	0.9173	107.0	5.52%	441.7	5.96%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.137e-01	0.9261	157.0	8.11%	640.7	8.65%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-2.135e-01	0.9261	27.0	1.39%	120.2	1.62%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.128e-01	0.9261	35.0	1.81%	153.9	2.08%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-2.120e-01	0.9261	47.0	2.43%	202.4	2.73%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-2.079e-01	0.9269	61.0	3.15%	259.4	3.50%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.050e-01	0.9284	192.0	9.91%	779.1	10.51%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.033e-01	0.9284	18.0	0.93%	83.1	1.12%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-2.033e-01	0.9284	18.0	0.93%	83.5	1.13%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-2.008e-01	0.9289	36.0	1.86%	158.3	2.14%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-2.000e-01	0.9289	8.0	0.41%	40.3	0.54%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.980e-01	0.9293	179.0	9.24%	729.2	9.84%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.975e-01	0.9293	144.0	7.43%	591.1	7.98%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-1.950e-01	0.9297	128.0	6.61%	528.8	7.14%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.941e-01	0.9297	54.0	2.79%	232.8	3.14%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.932e-01	0.9297	288.0	14.87%	1157.6	15.62%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.930e-01	0.9297	91.0	4.70%	381.8	5.15%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.880e-01	0.9317	7.0	0.36%	36.7	0.49%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.862e-01	0.9322	44.0	2.27%	192.3	2.59%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-1.843e-01	0.9329	165.0	8.52%	676.2	9.12%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.804e-01	0.9353	39.0	2.01%	172.2	2.32%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.771e-01	0.9373	59.0	3.05%	254.0	3.43%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.768e-01	0.9373	245.0	12.65%	992.8	13.40%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.750e-01	0.9373	77.0	3.98%	327.4	4.42%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.748e-01	0.9373	1.0	0.05%	7.4	0.10%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.748e-01	0.9373	1.0	0.05%	7.9	0.11%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.721e-01	0.9373	185.0	9.55%	757.4	10.22%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-1.686e-01	0.9385	300.0	15.49%	1209.5	16.32%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-1.684e-01	0.9385	124.0	6.40%	516.9	6.97%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-1.660e-01	0.9387	74.0	3.82%	316.8	4.27%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.653e-01	0.9387	222.0	11.46%	904.3	12.20%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.558e-01	0.9461	10.0	0.52%	51.9	0.70%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.554e-01	0.9461	8.0	0.41%	42.8	0.58%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.539e-01	0.9461	172.0	8.88%	709.8	9.58%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-1.531e-01	0.9461	82.0	4.23%	350.8	4.73%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-1.470e-01	0.9498	32.0	1.65%	146.4	1.98%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.467e-01	0.9498	9.0	0.46%	47.2	0.64%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.458e-01	0.9498	206.0	10.64%	845.9	11.41%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-1.437e-01	0.9498	7.0	0.36%	38.7	0.52%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.430e-01	0.9498	100.0	5.16%	424.4	5.73%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.417e-01	0.9498	204.0	10.53%	838.1	11.31%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.397e-01	0.9500	55.0	2.84%	242.7	3.27%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.385e-01	0.9500	10.0	0.52%	52.3	0.71%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-1.375e-01	0.9500	17.0	0.88%	83.2	1.12%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.371e-01	0.9500	102.0	5.27%	434.0	5.86%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-1.370e-01	0.9500	4.0	0.21%	24.9	0.34%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-1.357e-01	0.9500	43.0	2.22%	193.2	2.61%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.273e-01	0.9551	50.0	2.58%	223.4	3.01%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.270e-01	0.9551	304.0	15.69%	1235.7	16.67%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.250e-01	0.9551	378.0	19.51%	1525.9	20.59%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.208e-01	0.9579	223.0	11.51%	918.9	12.40%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.200e-01	0.9579	68.0	3.51%	298.5	4.03%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.179e-01	0.9585	299.0	15.44%	1218.5	16.44%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.177e-01	0.9585	18.0	0.93%	89.9	1.21%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.165e-01	0.9585	11.0	0.57%	58.9	0.79%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-1.130e-01	0.9598	44.0	2.27%	200.3	2.70%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-1.125e-01	0.9598	204.0	10.53%	845.6	11.41%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.124e-01	0.9598	228.0	11.77%	940.8	12.69%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.095e-01	0.9598	71.0	3.67%	312.9	4.22%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.022e-01	0.9657	1936.0	99.95%	7409.3	99.98%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.007e-01	0.9660	140.0	7.23%	593.9	8.01%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-9.902e-02	0.9665	39.0	2.01%	181.1	2.44%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-9.519e-02	0.9691	123.0	6.35%	526.4	7.10%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-9.256e-02	0.9705	136.0	7.02%	579.7	7.82%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-8.905e-02	0.9728	46.0	2.37%	213.0	2.87%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-8.874e-02	0.9728	72.0	3.72%	320.6	4.33%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.662e-02	0.9730	49.0	2.53%	225.1	3.04%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-8.525e-02	0.9732	10.0	0.52%	56.4	0.76%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.445e-02	0.9732	47.0	2.43%	217.5	2.93%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.349e-02	0.9732	6.0	0.31%	37.4	0.50%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-8.172e-02	0.9733	4.0	0.21%	27.7	0.37%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-7.664e-02	0.9771	156.0	8.05%	665.0	8.97%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-7.595e-02	0.9771	1.0	0.05%	10.4	0.14%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-7.087e-02	0.9805	30.0	1.55%	147.8	1.99%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-6.613e-02	0.9840	25.0	1.29%	126.9	1.71%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-6.376e-02	0.9852	24.0	1.24%	122.4	1.65%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-6.347e-02	0.9852	121.0	6.25%	527.5	7.12%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-6.344e-02	0.9852	46.0	2.37%	217.9	2.94%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-6.105e-02	0.9852	15.0	0.77%	82.9	1.12%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-5.794e-02	0.9865	1.0	0.05%	11.8	0.16%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-5.740e-02	0.9865	4.0	0.21%	29.3	0.40%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-5.740e-02	0.9865	4.0	0.21%	29.8	0.40%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-5.269e-02	0.9883	71.0	3.67%	325.4	4.39%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-5.137e-02	0.9885	36.0	1.86%	177.3	2.39%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-5.042e-02	0.9885	25.0	1.29%	129.4	1.75%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-4.990e-02	0.9885	11.0	0.57%	65.9	0.89%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-4.779e-02	0.9887	46.0	2.37%	221.3	2.99%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-4.600e-02	0.9894	95.0	4.90%	427.7	5.77%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-4.309e-02	0.9912	48.0	2.48%	231.8	3.13%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-3.779e-02	0.9953	12.0	0.62%	72.7	0.98%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.720e-02	0.9953	31.0	1.60%	159.0	2.15%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.680e-02	0.9953	82.0	4.23%	377.7	5.10%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.335e-02	0.9964	53.0	2.74%	256.8	3.47%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-2.902e-02	0.9996	113.0	5.83%	510.4	6.89%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-2.853e-02	0.9996	25.0	1.29%	135.1	1.82%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.620e-02	1.0000	66.0	3.41%	315.0	4.25%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.486e-02	1.0000	14.0	0.72%	85.5	1.15%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.367e-02	1.0000	27.0	1.39%	146.3	1.97%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-2.011e-02	1.0000	87.0	4.49%	408.3	5.51%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-1.894e-02	1.0000	8.0	0.41%	57.8	0.78%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.739e-02	1.0000	90.0	4.65%	423.3	5.71%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-1.642e-02	1.0000	188.0	9.71%	829.6	11.19%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.591e-02	1.0000	126.0	6.50%	575.9	7.77%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.559e-02	1.0000	25.0	1.29%	141.0	1.90%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.545e-02	1.0000	78.0	4.03%	374.9	5.06%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-1.017e-02	1.0000	14.0	0.72%	92.8	1.25%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-7.377e-03	1.0000	5.0	0.26%	46.5	0.63%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.343e-03	1.0000	22.0	1.14%	135.1	1.82%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-1.504e-03	1.0000	3.0	0.15%	41.8	0.56%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	29.2	0.39%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	0.000e+00	1.0000	0.0	0.00%	7.5	0.10%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	0.000e+00	1.0000	0.0	0.00%	4.9	0.07%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	0.000e+00	1.0000	0.0	0.00%	5.1	0.07%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	2.0	0.03%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	6.9	0.09%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	0.000e+00	1.0000	0.0	0.00%	4.7	0.06%