Interfaces for HDF5-Based Single Cell File Formats

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Documentation for package ‘SeuratDisk’ version 0.0.0.9020

• DESCRIPTION file.

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SeuratDisk-package	SeuratDisk: Interfaces for HDF5-Based Single Cell File Formats
AppendData	Append data from an h5Seurat file to a preexisting 'Seurat' object
AppendData.character	Append data from an h5Seurat file to a preexisting 'Seurat' object
AppendData.H5File	Append data from an h5Seurat file to a preexisting 'Seurat' object
AppendData.h5Seurat	Append data from an h5Seurat file to a preexisting 'Seurat' object
as.array	Load data from an HDF5 File
as.array.H5D	Load data from an HDF5 File
as.data.frame	Load data from an HDF5 File
as.data.frame.H5D	Load data from an HDF5 File
as.data.frame.H5Group	Load data from an HDF5 File
as.factor	Load data from an HDF5 File
as.factor-method	Load data from an HDF5 File
as.h5Seurat	Save a 'Seurat' object to an h5Seurat file
as.h5Seurat.default	Save a 'Seurat' object to an h5Seurat file
as.h5Seurat.H5File	Save a 'Seurat' object to an h5Seurat file
as.h5Seurat.Seurat	Save a 'Seurat' object to an h5Seurat file
as.list	Load data from an HDF5 File
as.list-method	Load data from an HDF5 File
as.logical	Load data from an HDF5 File
as.logical.H5D	Load data from an HDF5 File
as.loom	Save a 'Seurat' object to a loom file
as.loom.default	Save a 'Seurat' object to a loom file
as.loom.H5File	Save a 'Seurat' object to a loom file
as.loom.Seurat	Save a 'Seurat' object to a loom file
as.matrix	Load data from an HDF5 File
as.matrix.H5D	Load data from an HDF5 File
as.matrix.H5Group	Load data from an HDF5 File
as.Seurat	Load a saved 'Seurat' object from an h5Seurat file
as.Seurat	Loom-file Loading
as.Seurat.h5Seurat	Load a saved 'Seurat' object from an h5Seurat file
as.Seurat.loom	Loom-file Loading
as.sparse	Load data from an HDF5 File
as.sparse.H5D	Load data from an HDF5 File
as.sparse.H5Group	Load data from an HDF5 File
Cells	Seurat bindings for h5Seurat files
Cells.h5Seurat	Seurat bindings for h5Seurat files
Connect	Connect to a single-cell HDF5 dataset
Convert	Convert an on-disk single-cell dataset to another format
Convert.character	Convert an on-disk single-cell dataset to another format
Convert.H5File	Convert an on-disk single-cell dataset to another format
Convert.h5Seurat	Convert an on-disk single-cell dataset to another format
DefaultAssay	Seurat bindings for h5Seurat files
DefaultAssay	Seurat binding for loom files
DefaultAssay.h5Seurat	Seurat bindings for h5Seurat files
DefaultAssay.loom	Seurat binding for loom files
DefaultAssay<-.h5Seurat	Seurat bindings for h5Seurat files
dim	Seurat binding for loom files
dim.loom	Seurat binding for loom files
dimnames	Load data from an HDF5 File
dimnames.H5D	Load data from an HDF5 File
GetSCDisk	Get and Register 'scdisk' Subclasses
h5Seurat	A class for connections to h5Seurat files
h5Seurat-bindings	Seurat bindings for h5Seurat files
h5Seurat-class	A class for connections to h5Seurat files
Idents	Seurat bindings for h5Seurat files
Idents.h5Seurat	Seurat bindings for h5Seurat files
IsGlobal	Seurat bindings for h5Seurat files
IsGlobal.H5Group	Seurat bindings for h5Seurat files
Key	Seurat bindings for h5Seurat files
Key.H5Group	Seurat bindings for h5Seurat files
LoadH5Seurat	Load a saved 'Seurat' object from an h5Seurat file
LoadH5Seurat.character	Load a saved 'Seurat' object from an h5Seurat file
LoadH5Seurat.H5File	Load a saved 'Seurat' object from an h5Seurat file
LoadH5Seurat.h5Seurat	Load a saved 'Seurat' object from an h5Seurat file
LoadLoom	Loom-file Loading
LoadLoom.character	Loom-file Loading
LoadLoom.H5File	Loom-file Loading
LoadLoom.loom	Loom-file Loading
loom	A class for connections to loom files
loom-bindings	Seurat binding for loom files
loom-class	A class for connections to loom files
Project	Seurat bindings for h5Seurat files
Project.h5Seurat	Seurat bindings for h5Seurat files
Project<-.h5Seurat	Seurat bindings for h5Seurat files
ReadH5	Load data from an HDF5 File
RegisterSCDisk	Get and Register 'scdisk' Subclasses
SaveH5Seurat	Save a 'Seurat' object to an h5Seurat file
SaveH5Seurat.default	Save a 'Seurat' object to an h5Seurat file
SaveH5Seurat.Seurat	Save a 'Seurat' object to an h5Seurat file
SaveLoom	Save a 'Seurat' object to a loom file
SaveLoom.default	Save a 'Seurat' object to a loom file
SaveLoom.Seurat	Save a 'Seurat' object to a loom file
scdisk	A disk-based object for single-cell analysis
scdisk-class	A disk-based object for single-cell analysis
SeuratDisk	SeuratDisk: Interfaces for HDF5-Based Single Cell File Formats
Stdev.h5Seurat	Seurat bindings for h5Seurat files
Transpose	Transpose a matrix
Transpose.dgCMatrix	Transpose a matrix
Transpose.H5D	Transpose a matrix
Transpose.H5Group	Transpose a matrix
WriteH5Group	Write data to an HDF5 group
WriteH5Group-method	Write data to an HDF5 group
_PACKAGE	SeuratDisk: Interfaces for HDF5-Based Single Cell File Formats