Package: SeuratDisk
Type: Package
Title: Interfaces for HDF5-Based Single Cell File Formats
Version: 0.0.0.9020
Date: 2022-04-22
Authors@R: c(
  person(given = 'Paul', family = 'Hoffman', email = 'phoffman@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-9448-8833'))
  )
Description: The h5Seurat file format is specifically designed for the storage
  and analysis of multi-modal single-cell and spatially-resolved expression
  experiments, for example, from CITE-seq or 10X Visium technologies. It holds
  all molecular information and associated metadata, including (for example)
  nearest-neighbor graphs, dimensional reduction information, spatial
  coordinates and image data, and cluster labels. We also support rapid and
  on-disk conversion between h5Seurat and AnnData objects, with the goal of
  enhancing interoperability between Seurat and Scanpy.
URL: https://mojaveazure.github.io/seurat-disk/,
        https://github.com/mojaveazure/seurat-disk
BugReports: https://github.com/mojaveazure/seurat-disk/issues
License: GPL-3 | file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
Remotes: satijalab/seurat-data
Depends: R (>= 3.6.0)
Imports: cli (>= 2.0.1), crayon (>= 1.3.4), hdf5r (>= 1.3.0), Matrix
        (>= 1.2.18), methods (>= 3.6.0), R6 (>= 2.4.1), rlang (>=
        0.4.4), Seurat (>= 3.2.0), SeuratObject (>= 4.0.0), stats,
        stringi (>= 1.4.6), tools, utils, withr (>= 2.1.2)
Collate: 'zzz.R' 'GetObject.R' 'AssembleObject.R' 'AppendData.R'
        'TestObject.R' 'TestH5.R' 'h5info.R' 'scdisk.R' 'h5Seurat.R'
        'Connect.R' 'PadMatrix.R' 'sparse_matrix.R' 'Transpose.R'
        'Convert.R' 'LoadH5Seurat.R' 'loom.R' 'loom_bindings.R'
        'LoadLoom.R' 'ReadH5.R' 'WriteH5Group.R' 'SaveH5Seurat.R'
        'SaveLoom.R' 'h5Seurat_bindings.R'
Suggests: httr, knitr, rmarkdown, SeuratData
VignetteBuilder: knitr
RemoteType: github
RemoteHost: api.github.com
RemoteRepo: seurat-disk
RemoteUsername: mojaveazure
RemoteRef: HEAD
RemoteSha: 9b89970eac2a3bd770e744f63c7763419486b14c
GithubRepo: seurat-disk
GithubUsername: mojaveazure
GithubRef: HEAD
GithubSHA1: 9b89970eac2a3bd770e744f63c7763419486b14c
NeedsCompilation: no
Packaged: 2022-09-15 17:41:32 UTC; atwang
Author: Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
  Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Maintainer: Paul Hoffman <phoffman@nygenome.org>
Built: R 4.1.3; ; 2022-09-15 17:41:33 UTC; unix