| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-229 | -5.281e+02 | 0.0000 | 1469.0 | 33.78% | 3091.1 | 14.24% | motif file (matrix) |
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| 2 |  | REB1/SacCer-Promoters/Homer | 1e-194 | -4.474e+02 | 0.0000 | 953.0 | 21.91% | 1635.4 | 7.54% | motif file (matrix) |
pdf |
| 3 |  | RLR1?/SacCer-Promoters/Homer | 1e-61 | -1.416e+02 | 0.0000 | 2045.0 | 47.02% | 7545.5 | 34.77% | motif file (matrix) |
pdf |
| 4 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-56 | -1.311e+02 | 0.0000 | 563.0 | 12.95% | 1364.5 | 6.29% | motif file (matrix) |
pdf |
| 5 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-44 | -1.027e+02 | 0.0000 | 408.0 | 9.38% | 949.1 | 4.37% | motif file (matrix) |
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| 6 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-44 | -1.024e+02 | 0.0000 | 419.0 | 9.63% | 988.3 | 4.55% | motif file (matrix) |
pdf |
| 7 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-43 | -1.011e+02 | 0.0000 | 1042.0 | 23.96% | 3422.0 | 15.77% | motif file (matrix) |
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| 8 |  | SeqBias: CG-repeat | 1e-43 | -1.005e+02 | 0.0000 | 720.0 | 16.56% | 2113.6 | 9.74% | motif file (matrix) |
pdf |
| 9 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-42 | -9.803e+01 | 0.0000 | 617.0 | 14.19% | 1730.1 | 7.97% | motif file (matrix) |
pdf |
| 10 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-40 | -9.376e+01 | 0.0000 | 548.0 | 12.60% | 1494.1 | 6.88% | motif file (matrix) |
pdf |
| 11 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-36 | -8.425e+01 | 0.0000 | 466.0 | 10.72% | 1242.0 | 5.72% | motif file (matrix) |
pdf |
| 12 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-36 | -8.327e+01 | 0.0000 | 379.0 | 8.71% | 934.8 | 4.31% | motif file (matrix) |
pdf |
| 13 |  | SFP1/SacCer-Promoters/Homer | 1e-34 | -8.042e+01 | 0.0000 | 628.0 | 14.44% | 1884.4 | 8.68% | motif file (matrix) |
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| 14 |  | TATA-box/SacCer-Promoters/Homer | 1e-30 | -6.923e+01 | 0.0000 | 2026.0 | 46.59% | 8253.6 | 38.03% | motif file (matrix) |
pdf |
| 15 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-28 | -6.560e+01 | 0.0000 | 836.0 | 19.22% | 2857.1 | 13.16% | motif file (matrix) |
pdf |
| 16 |  | E-box/Arabidopsis-Promoters/Homer | 1e-27 | -6.447e+01 | 0.0000 | 489.0 | 11.24% | 1448.8 | 6.68% | motif file (matrix) |
pdf |
| 17 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-27 | -6.415e+01 | 0.0000 | 927.0 | 21.32% | 3262.0 | 15.03% | motif file (matrix) |
pdf |
| 18 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-27 | -6.399e+01 | 0.0000 | 404.0 | 9.29% | 1126.7 | 5.19% | motif file (matrix) |
pdf |
| 19 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-27 | -6.315e+01 | 0.0000 | 1279.0 | 29.41% | 4832.1 | 22.26% | motif file (matrix) |
pdf |
| 20 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-27 | -6.283e+01 | 0.0000 | 547.0 | 12.58% | 1688.3 | 7.78% | motif file (matrix) |
pdf |
| 21 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-25 | -5.976e+01 | 0.0000 | 786.0 | 18.07% | 2700.0 | 12.44% | motif file (matrix) |
pdf |
| 22 |  | E-box(bHLH)/Promoter/Homer | 1e-25 | -5.801e+01 | 0.0000 | 122.0 | 2.81% | 199.5 | 0.92% | motif file (matrix) |
pdf |
| 23 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-22 | -5.235e+01 | 0.0000 | 1036.0 | 23.82% | 3870.2 | 17.83% | motif file (matrix) |
pdf |
| 24 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-18 | -4.203e+01 | 0.0000 | 127.0 | 2.92% | 259.6 | 1.20% | motif file (matrix) |
pdf |
| 25 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-18 | -4.200e+01 | 0.0000 | 758.0 | 17.43% | 2767.8 | 12.75% | motif file (matrix) |
pdf |
| 26 |  | TOD6?/SacCer-Promoters/Homer | 1e-16 | -3.774e+01 | 0.0000 | 322.0 | 7.40% | 985.9 | 4.54% | motif file (matrix) |
pdf |
| 27 |  | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-15 | -3.498e+01 | 0.0000 | 376.0 | 8.65% | 1223.7 | 5.64% | motif file (matrix) |
pdf |
| 28 |  | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-14 | -3.420e+01 | 0.0000 | 304.0 | 6.99% | 941.5 | 4.34% | motif file (matrix) |
pdf |
| 29 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-14 | -3.408e+01 | 0.0000 | 1345.0 | 30.93% | 5554.5 | 25.59% | motif file (matrix) |
pdf |
| 30 |  | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-13 | -3.045e+01 | 0.0000 | 225.0 | 5.17% | 661.0 | 3.05% | motif file (matrix) |
pdf |
| 31 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-12 | -2.945e+01 | 0.0000 | 980.0 | 22.53% | 3938.2 | 18.15% | motif file (matrix) |
pdf |
| 32 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-12 | -2.944e+01 | 0.0000 | 505.0 | 11.61% | 1819.7 | 8.38% | motif file (matrix) |
pdf |
| 33 |  | SUT1?/SacCer-Promoters/Homer | 1e-11 | -2.682e+01 | 0.0000 | 2829.0 | 65.05% | 13008.6 | 59.94% | motif file (matrix) |
pdf |
| 34 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-11 | -2.613e+01 | 0.0000 | 718.0 | 16.51% | 2801.6 | 12.91% | motif file (matrix) |
pdf |
| 35 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-10 | -2.357e+01 | 0.0000 | 299.0 | 6.88% | 1013.7 | 4.67% | motif file (matrix) |
pdf |
| 36 |  | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-9 | -2.190e+01 | 0.0000 | 486.0 | 11.17% | 1832.0 | 8.44% | motif file (matrix) |
pdf |
| 37 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-9 | -2.161e+01 | 0.0000 | 146.0 | 3.36% | 420.1 | 1.94% | motif file (matrix) |
pdf |
| 38 |  | SeqBias: TA-repeat | 1e-8 | -2.055e+01 | 0.0000 | 3869.0 | 88.96% | 18643.8 | 85.90% | motif file (matrix) |
pdf |
| 39 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-8 | -2.048e+01 | 0.0000 | 283.0 | 6.51% | 978.8 | 4.51% | motif file (matrix) |
pdf |
| 40 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-8 | -2.002e+01 | 0.0000 | 417.0 | 9.59% | 1556.1 | 7.17% | motif file (matrix) |
pdf |
| 41 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-8 | -1.943e+01 | 0.0000 | 59.0 | 1.36% | 124.9 | 0.58% | motif file (matrix) |
pdf |
| 42 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-8 | -1.923e+01 | 0.0000 | 131.0 | 3.01% | 379.9 | 1.75% | motif file (matrix) |
pdf |
| 43 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-8 | -1.853e+01 | 0.0000 | 110.0 | 2.53% | 305.7 | 1.41% | motif file (matrix) |
pdf |
| 44 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.788e+01 | 0.0000 | 267.0 | 6.14% | 939.7 | 4.33% | motif file (matrix) |
pdf |
| 45 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-7 | -1.774e+01 | 0.0000 | 185.0 | 4.25% | 602.5 | 2.78% | motif file (matrix) |
pdf |
| 46 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-7 | -1.748e+01 | 0.0000 | 1550.0 | 35.64% | 6890.4 | 31.75% | motif file (matrix) |
pdf |
| 47 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-7 | -1.654e+01 | 0.0000 | 130.0 | 2.99% | 394.2 | 1.82% | motif file (matrix) |
pdf |
| 48 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-7 | -1.619e+01 | 0.0000 | 94.0 | 2.16% | 260.9 | 1.20% | motif file (matrix) |
pdf |
| 49 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-6 | -1.569e+01 | 0.0000 | 124.0 | 2.85% | 378.0 | 1.74% | motif file (matrix) |
pdf |
| 50 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-6 | -1.503e+01 | 0.0000 | 568.0 | 13.06% | 2310.4 | 10.65% | motif file (matrix) |
pdf |
| 51 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-6 | -1.384e+01 | 0.0000 | 454.0 | 10.44% | 1815.7 | 8.37% | motif file (matrix) |
pdf |
| 52 |  | NRF(NRF)/Promoter/Homer | 1e-5 | -1.357e+01 | 0.0000 | 88.0 | 2.02% | 254.6 | 1.17% | motif file (matrix) |
pdf |
| 53 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.312e+01 | 0.0000 | 1362.0 | 31.32% | 6105.8 | 28.13% | motif file (matrix) |
pdf |
| 54 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-5 | -1.242e+01 | 0.0000 | 744.0 | 17.11% | 3180.1 | 14.65% | motif file (matrix) |
pdf |
| 55 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.216e+01 | 0.0000 | 959.0 | 22.05% | 4201.6 | 19.36% | motif file (matrix) |
pdf |
| 56 |  | CRE(bZIP)/Promoter/Homer | 1e-4 | -1.127e+01 | 0.0001 | 182.0 | 4.18% | 656.7 | 3.03% | motif file (matrix) |
pdf |
| 57 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -1.103e+01 | 0.0001 | 41.0 | 0.94% | 98.3 | 0.45% | motif file (matrix) |
pdf |
| 58 |  | TATA-box/Drosophila-Promoters/Homer | 1e-4 | -1.070e+01 | 0.0001 | 215.0 | 4.94% | 805.4 | 3.71% | motif file (matrix) |
pdf |
| 59 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.065e+01 | 0.0002 | 787.0 | 18.10% | 3428.5 | 15.80% | motif file (matrix) |
pdf |
| 60 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.057e+01 | 0.0002 | 43.0 | 0.99% | 107.9 | 0.50% | motif file (matrix) |
pdf |
| 61 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-4 | -9.559e+00 | 0.0004 | 271.0 | 6.23% | 1069.9 | 4.93% | motif file (matrix) |
pdf |
| 62 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-4 | -9.512e+00 | 0.0005 | 491.0 | 11.29% | 2072.0 | 9.55% | motif file (matrix) |
pdf |
| 63 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-4 | -9.433e+00 | 0.0005 | 69.0 | 1.59% | 210.7 | 0.97% | motif file (matrix) |
pdf |
| 64 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-4 | -9.433e+00 | 0.0005 | 69.0 | 1.59% | 210.7 | 0.97% | motif file (matrix) |
pdf |
| 65 |  | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-4 | -9.345e+00 | 0.0005 | 203.0 | 4.67% | 772.7 | 3.56% | motif file (matrix) |
pdf |
| 66 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-4 | -9.296e+00 | 0.0005 | 118.0 | 2.71% | 409.1 | 1.89% | motif file (matrix) |
pdf |
| 67 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-3 | -9.163e+00 | 0.0006 | 99.0 | 2.28% | 332.6 | 1.53% | motif file (matrix) |
pdf |
| 68 |  | ETS(ETS)/Promoter/Homer | 1e-3 | -8.735e+00 | 0.0009 | 319.0 | 7.34% | 1300.7 | 5.99% | motif file (matrix) |
pdf |
| 69 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-3 | -8.607e+00 | 0.0010 | 34.0 | 0.78% | 85.6 | 0.39% | motif file (matrix) |
pdf |
| 70 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-3 | -8.386e+00 | 0.0013 | 654.0 | 15.04% | 2864.1 | 13.20% | motif file (matrix) |
pdf |
| 71 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -8.379e+00 | 0.0013 | 74.0 | 1.70% | 238.0 | 1.10% | motif file (matrix) |
pdf |
| 72 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.948e+00 | 0.0019 | 164.0 | 3.77% | 622.2 | 2.87% | motif file (matrix) |
pdf |
| 73 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.227e+00 | 0.0039 | 252.0 | 5.79% | 1026.5 | 4.73% | motif file (matrix) |
pdf |
| 74 |  | ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -7.085e+00 | 0.0044 | 46.0 | 1.06% | 138.6 | 0.64% | motif file (matrix) |
pdf |
| 75 |  | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.825e+00 | 0.0056 | 523.0 | 12.03% | 2292.1 | 10.56% | motif file (matrix) |
pdf |
| 76 |  | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.599e+00 | 0.0069 | 191.0 | 4.39% | 764.0 | 3.52% | motif file (matrix) |
pdf |
| 77 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.342e+00 | 0.0088 | 243.0 | 5.59% | 1003.8 | 4.63% | motif file (matrix) |
pdf |
| 78 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-2 | -5.852e+00 | 0.0143 | 360.0 | 8.28% | 1555.9 | 7.17% | motif file (matrix) |
pdf |
| 79 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.830e+00 | 0.0144 | 579.0 | 13.31% | 2589.4 | 11.93% | motif file (matrix) |
pdf |
| 80 |  | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-2 | -5.712e+00 | 0.0160 | 1556.0 | 35.78% | 7338.1 | 33.81% | motif file (matrix) |
pdf |
| 81 |  | NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer | 1e-2 | -5.702e+00 | 0.0160 | 37.0 | 0.85% | 113.3 | 0.52% | motif file (matrix) |
pdf |
| 82 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-2 | -5.687e+00 | 0.0160 | 38.0 | 0.87% | 117.5 | 0.54% | motif file (matrix) |
pdf |
| 83 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -5.409e+00 | 0.0209 | 40.0 | 0.92% | 127.8 | 0.59% | motif file (matrix) |
pdf |
| 84 |  | Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.368e+00 | 0.0215 | 451.0 | 10.37% | 1997.7 | 9.20% | motif file (matrix) |
pdf |
| 85 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.327e+00 | 0.0221 | 1219.0 | 28.03% | 5704.9 | 26.29% | motif file (matrix) |
pdf |
| 86 |  | NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -5.102e+00 | 0.0274 | 56.0 | 1.29% | 195.7 | 0.90% | motif file (matrix) |
pdf |
| 87 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.091e+00 | 0.0274 | 455.0 | 10.46% | 2025.6 | 9.33% | motif file (matrix) |
pdf |
| 88 |  | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.889e+00 | 0.0331 | 142.0 | 3.27% | 574.7 | 2.65% | motif file (matrix) |
pdf |
| 89 |  | Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-2 | -4.771e+00 | 0.0368 | 119.0 | 2.74% | 473.2 | 2.18% | motif file (matrix) |
pdf |
| 90 |  | GAGA-repeat/SacCer-Promoters/Homer | 1e-2 | -4.750e+00 | 0.0372 | 3368.0 | 77.44% | 16472.8 | 75.90% | motif file (matrix) |
pdf |