Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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1 | | ABF1/SacCer-Promoters/Homer | 1e-217 | -5.015e+02 | 0.0000 | 1548.0 | 35.73% | 3203.2 | 16.01% | motif file (matrix) |
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2 | | REB1/SacCer-Promoters/Homer | 1e-186 | -4.295e+02 | 0.0000 | 985.0 | 22.73% | 1645.8 | 8.23% | motif file (matrix) |
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3 | | RLR1?/SacCer-Promoters/Homer | 1e-66 | -1.532e+02 | 0.0000 | 2022.0 | 46.67% | 6789.0 | 33.93% | motif file (matrix) |
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4 | | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-56 | -1.290e+02 | 0.0000 | 609.0 | 14.05% | 1424.0 | 7.12% | motif file (matrix) |
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5 | | SeqBias: CG-repeat | 1e-50 | -1.167e+02 | 0.0000 | 798.0 | 18.42% | 2144.6 | 10.72% | motif file (matrix) |
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6 | | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-48 | -1.108e+02 | 0.0000 | 707.0 | 16.32% | 1851.0 | 9.25% | motif file (matrix) |
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7 | | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-46 | -1.069e+02 | 0.0000 | 462.0 | 10.66% | 1034.3 | 5.17% | motif file (matrix) |
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8 | | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-42 | -9.814e+01 | 0.0000 | 431.0 | 9.95% | 970.4 | 4.85% | motif file (matrix) |
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9 | | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-42 | -9.731e+01 | 0.0000 | 1105.0 | 25.50% | 3443.9 | 17.21% | motif file (matrix) |
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10 | | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-39 | -9.210e+01 | 0.0000 | 597.0 | 13.78% | 1563.6 | 7.81% | motif file (matrix) |
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11 | | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-39 | -9.195e+01 | 0.0000 | 512.0 | 11.82% | 1268.8 | 6.34% | motif file (matrix) |
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12 | | SFP1/SacCer-Promoters/Homer | 1e-38 | -8.778e+01 | 0.0000 | 642.0 | 14.82% | 1749.7 | 8.74% | motif file (matrix) |
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13 | | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-35 | -8.096e+01 | 0.0000 | 414.0 | 9.55% | 990.5 | 4.95% | motif file (matrix) |
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14 | | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-29 | -6.815e+01 | 0.0000 | 455.0 | 10.50% | 1197.5 | 5.98% | motif file (matrix) |
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15 | | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-29 | -6.781e+01 | 0.0000 | 617.0 | 14.24% | 1787.5 | 8.93% | motif file (matrix) |
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16 | | E-box/Arabidopsis-Promoters/Homer | 1e-27 | -6.377e+01 | 0.0000 | 534.0 | 12.32% | 1508.2 | 7.54% | motif file (matrix) |
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17 | | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-26 | -6.002e+01 | 0.0000 | 909.0 | 20.98% | 2985.3 | 14.92% | motif file (matrix) |
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18 | | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-23 | -5.307e+01 | 0.0000 | 140.0 | 3.23% | 244.3 | 1.22% | motif file (matrix) |
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19 | | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-22 | -5.221e+01 | 0.0000 | 991.0 | 22.87% | 3398.2 | 16.98% | motif file (matrix) |
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20 | | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-22 | -5.215e+01 | 0.0000 | 823.0 | 18.99% | 2717.4 | 13.58% | motif file (matrix) |
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21 | | E-box(bHLH)/Promoter/Homer | 1e-21 | -4.989e+01 | 0.0000 | 135.0 | 3.12% | 239.5 | 1.20% | motif file (matrix) |
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22 | | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-21 | -4.976e+01 | 0.0000 | 1364.0 | 31.48% | 4994.7 | 24.96% | motif file (matrix) |
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23 | | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-21 | -4.924e+01 | 0.0000 | 609.0 | 14.05% | 1901.2 | 9.50% | motif file (matrix) |
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24 | | TATA-box/SacCer-Promoters/Homer | 1e-21 | -4.911e+01 | 0.0000 | 1906.0 | 43.99% | 7378.1 | 36.87% | motif file (matrix) |
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25 | | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-19 | -4.516e+01 | 0.0000 | 430.0 | 9.92% | 1255.2 | 6.27% | motif file (matrix) |
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26 | | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-18 | -4.265e+01 | 0.0000 | 833.0 | 19.22% | 2858.6 | 14.29% | motif file (matrix) |
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27 | | TOD6?/SacCer-Promoters/Homer | 1e-17 | -4.062e+01 | 0.0000 | 335.0 | 7.73% | 939.5 | 4.70% | motif file (matrix) |
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28 | | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-16 | -3.911e+01 | 0.0000 | 1104.0 | 25.48% | 4030.1 | 20.14% | motif file (matrix) |
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29 | | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-15 | -3.542e+01 | 0.0000 | 334.0 | 7.71% | 972.7 | 4.86% | motif file (matrix) |
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30 | | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-14 | -3.395e+01 | 0.0000 | 297.0 | 6.85% | 847.2 | 4.23% | motif file (matrix) |
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31 | | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-14 | -3.235e+01 | 0.0000 | 360.0 | 8.31% | 1093.3 | 5.46% | motif file (matrix) |
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32 | | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-13 | -3.201e+01 | 0.0000 | 495.0 | 11.42% | 1617.9 | 8.09% | motif file (matrix) |
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33 | | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-13 | -3.104e+01 | 0.0000 | 322.0 | 7.43% | 961.8 | 4.81% | motif file (matrix) |
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34 | | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-12 | -2.979e+01 | 0.0000 | 812.0 | 18.74% | 2932.8 | 14.66% | motif file (matrix) |
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35 | | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-12 | -2.857e+01 | 0.0000 | 1442.0 | 33.28% | 5660.5 | 28.29% | motif file (matrix) |
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36 | | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-12 | -2.822e+01 | 0.0000 | 1080.0 | 24.92% | 4091.2 | 20.45% | motif file (matrix) |
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37 | | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-12 | -2.779e+01 | 0.0000 | 261.0 | 6.02% | 760.6 | 3.80% | motif file (matrix) |
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38 | | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-11 | -2.704e+01 | 0.0000 | 548.0 | 12.65% | 1883.1 | 9.41% | motif file (matrix) |
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39 | | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-9 | -2.295e+01 | 0.0000 | 163.0 | 3.76% | 440.7 | 2.20% | motif file (matrix) |
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40 | | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-8 | -1.965e+01 | 0.0000 | 160.0 | 3.69% | 451.1 | 2.25% | motif file (matrix) |
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41 | | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-8 | -1.910e+01 | 0.0000 | 759.0 | 17.52% | 2875.9 | 14.37% | motif file (matrix) |
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42 | | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-8 | -1.870e+01 | 0.0000 | 131.0 | 3.02% | 354.2 | 1.77% | motif file (matrix) |
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43 | | SUT1?/SacCer-Promoters/Homer | 1e-7 | -1.762e+01 | 0.0000 | 2983.0 | 68.84% | 12986.2 | 64.90% | motif file (matrix) |
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44 | | NRF(NRF)/Promoter/Homer | 1e-7 | -1.708e+01 | 0.0000 | 111.0 | 2.56% | 294.2 | 1.47% | motif file (matrix) |
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45 | | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-6 | -1.524e+01 | 0.0000 | 144.0 | 3.32% | 425.8 | 2.13% | motif file (matrix) |
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46 | | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-6 | -1.485e+01 | 0.0000 | 1649.0 | 38.06% | 6891.8 | 34.44% | motif file (matrix) |
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47 | | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-6 | -1.391e+01 | 0.0000 | 490.0 | 11.31% | 1829.7 | 9.14% | motif file (matrix) |
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48 | | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.301e+01 | 0.0000 | 1034.0 | 23.86% | 4196.7 | 20.97% | motif file (matrix) |
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49 | | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.253e+01 | 0.0000 | 55.0 | 1.27% | 129.5 | 0.65% | motif file (matrix) |
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50 | | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-5 | -1.206e+01 | 0.0000 | 105.0 | 2.42% | 306.1 | 1.53% | motif file (matrix) |
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51 | | SeqBias: TA-repeat | 1e-5 | -1.202e+01 | 0.0000 | 3817.0 | 88.09% | 17170.6 | 85.81% | motif file (matrix) |
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52 | | GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-5 | -1.158e+01 | 0.0001 | 130.0 | 3.00% | 403.6 | 2.02% | motif file (matrix) |
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53 | | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-4 | -1.132e+01 | 0.0001 | 188.0 | 4.34% | 630.9 | 3.15% | motif file (matrix) |
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54 | | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-4 | -1.114e+01 | 0.0001 | 125.0 | 2.88% | 388.2 | 1.94% | motif file (matrix) |
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55 | | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-4 | -1.098e+01 | 0.0001 | 589.0 | 13.59% | 2306.5 | 11.53% | motif file (matrix) |
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56 | | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.076e+01 | 0.0001 | 844.0 | 19.48% | 3419.8 | 17.09% | motif file (matrix) |
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57 | | Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.040e+01 | 0.0002 | 86.0 | 1.98% | 249.8 | 1.25% | motif file (matrix) |
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58 | | PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-4 | -1.004e+01 | 0.0003 | 523.0 | 12.07% | 2043.0 | 10.21% | motif file (matrix) |
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59 | | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-4 | -9.721e+00 | 0.0004 | 218.0 | 5.03% | 770.6 | 3.85% | motif file (matrix) |
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60 | | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-4 | -9.349e+00 | 0.0006 | 535.0 | 12.35% | 2110.1 | 10.55% | motif file (matrix) |
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61 | | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.645e+00 | 0.0011 | 45.0 | 1.04% | 115.5 | 0.58% | motif file (matrix) |
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62 | | CRE(bZIP)/Promoter/Homer | 1e-3 | -8.386e+00 | 0.0014 | 192.0 | 4.43% | 683.7 | 3.42% | motif file (matrix) |
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63 | | ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -7.990e+00 | 0.0021 | 19.0 | 0.44% | 35.3 | 0.18% | motif file (matrix) |
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64 | | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-3 | -7.443e+00 | 0.0035 | 119.0 | 2.75% | 402.1 | 2.01% | motif file (matrix) |
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65 | | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-3 | -7.437e+00 | 0.0035 | 298.0 | 6.88% | 1139.6 | 5.70% | motif file (matrix) |
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66 | | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.192e+00 | 0.0044 | 186.0 | 4.29% | 676.0 | 3.38% | motif file (matrix) |
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67 | | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.177e+00 | 0.0044 | 1413.0 | 32.61% | 6077.8 | 30.37% | motif file (matrix) |
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68 | | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -6.943e+00 | 0.0055 | 195.0 | 4.50% | 717.0 | 3.58% | motif file (matrix) |
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69 | | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-2 | -6.804e+00 | 0.0062 | 77.0 | 1.78% | 245.7 | 1.23% | motif file (matrix) |
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70 | | PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.783e+00 | 0.0063 | 85.0 | 1.96% | 276.1 | 1.38% | motif file (matrix) |
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71 | | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.713e+00 | 0.0066 | 566.0 | 13.06% | 2312.8 | 11.56% | motif file (matrix) |
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72 | | TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-2 | -6.570e+00 | 0.0075 | 52.0 | 1.20% | 153.7 | 0.77% | motif file (matrix) |
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73 | | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-2 | -6.379e+00 | 0.0090 | 216.0 | 4.98% | 814.8 | 4.07% | motif file (matrix) |
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74 | | ETS(ETS)/Promoter/Homer | 1e-2 | -5.800e+00 | 0.0158 | 337.0 | 7.78% | 1341.2 | 6.70% | motif file (matrix) |
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75 | | Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer | 1e-2 | -5.626e+00 | 0.0186 | 169.0 | 3.90% | 632.0 | 3.16% | motif file (matrix) |
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76 | | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.601e+00 | 0.0188 | 610.0 | 14.08% | 2540.4 | 12.70% | motif file (matrix) |
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77 | | TATA-box/Drosophila-Promoters/Homer | 1e-2 | -5.526e+00 | 0.0200 | 197.0 | 4.55% | 750.6 | 3.75% | motif file (matrix) |
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78 | | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.510e+00 | 0.0201 | 169.0 | 3.90% | 633.7 | 3.17% | motif file (matrix) |
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79 | | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.497e+00 | 0.0201 | 272.0 | 6.28% | 1069.6 | 5.35% | motif file (matrix) |
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80 | | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-2 | -5.394e+00 | 0.0220 | 42.0 | 0.97% | 125.7 | 0.63% | motif file (matrix) |
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81 | | ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.140e+00 | 0.0280 | 166.0 | 3.83% | 627.4 | 3.14% | motif file (matrix) |
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82 | | GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.087e+00 | 0.0291 | 786.0 | 18.14% | 3341.4 | 16.70% | motif file (matrix) |
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83 | | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -5.018e+00 | 0.0309 | 500.0 | 11.54% | 2074.7 | 10.37% | motif file (matrix) |
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84 | | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-2 | -4.999e+00 | 0.0311 | 1678.0 | 38.73% | 7383.8 | 36.90% | motif file (matrix) |
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85 | | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.921e+00 | 0.0332 | 1319.0 | 30.44% | 5751.9 | 28.75% | motif file (matrix) |
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