| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-218 | -5.037e+02 | 0.0000 | 1521.0 | 35.35% | 3168.1 | 15.64% | motif file (matrix) |
pdf |
| 2 |  | REB1/SacCer-Promoters/Homer | 1e-171 | -3.942e+02 | 0.0000 | 950.0 | 22.08% | 1663.3 | 8.21% | motif file (matrix) |
pdf |
| 3 |  | RLR1?/SacCer-Promoters/Homer | 1e-65 | -1.507e+02 | 0.0000 | 2032.0 | 47.22% | 6988.7 | 34.51% | motif file (matrix) |
pdf |
| 4 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-53 | -1.231e+02 | 0.0000 | 594.0 | 13.80% | 1426.9 | 7.05% | motif file (matrix) |
pdf |
| 5 |  | SeqBias: CG-repeat | 1e-47 | -1.098e+02 | 0.0000 | 793.0 | 18.43% | 2208.2 | 10.90% | motif file (matrix) |
pdf |
| 6 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-42 | -9.817e+01 | 0.0000 | 442.0 | 10.27% | 1025.9 | 5.07% | motif file (matrix) |
pdf |
| 7 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-42 | -9.683e+01 | 0.0000 | 430.0 | 9.99% | 991.4 | 4.90% | motif file (matrix) |
pdf |
| 8 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-41 | -9.568e+01 | 0.0000 | 579.0 | 13.46% | 1509.0 | 7.45% | motif file (matrix) |
pdf |
| 9 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-41 | -9.474e+01 | 0.0000 | 666.0 | 15.48% | 1829.1 | 9.03% | motif file (matrix) |
pdf |
| 10 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-39 | -9.015e+01 | 0.0000 | 411.0 | 9.55% | 957.7 | 4.73% | motif file (matrix) |
pdf |
| 11 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-36 | -8.347e+01 | 0.0000 | 1072.0 | 24.91% | 3492.3 | 17.25% | motif file (matrix) |
pdf |
| 12 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-35 | -8.244e+01 | 0.0000 | 494.0 | 11.48% | 1279.9 | 6.32% | motif file (matrix) |
pdf |
| 13 |  | SFP1/SacCer-Promoters/Homer | 1e-33 | -7.810e+01 | 0.0000 | 622.0 | 14.46% | 1770.4 | 8.74% | motif file (matrix) |
pdf |
| 14 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-28 | -6.595e+01 | 0.0000 | 597.0 | 13.87% | 1759.7 | 8.69% | motif file (matrix) |
pdf |
| 15 |  | TATA-box/SacCer-Promoters/Homer | 1e-28 | -6.496e+01 | 0.0000 | 2019.0 | 46.92% | 7813.7 | 38.59% | motif file (matrix) |
pdf |
| 16 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-27 | -6.390e+01 | 0.0000 | 438.0 | 10.18% | 1184.8 | 5.85% | motif file (matrix) |
pdf |
| 17 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-25 | -5.907e+01 | 0.0000 | 1353.0 | 31.44% | 4925.8 | 24.32% | motif file (matrix) |
pdf |
| 18 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-25 | -5.879e+01 | 0.0000 | 1131.0 | 26.28% | 3979.8 | 19.65% | motif file (matrix) |
pdf |
| 19 |  | E-box/Arabidopsis-Promoters/Homer | 1e-25 | -5.794e+01 | 0.0000 | 521.0 | 12.11% | 1529.1 | 7.55% | motif file (matrix) |
pdf |
| 20 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-24 | -5.680e+01 | 0.0000 | 892.0 | 20.73% | 3005.3 | 14.84% | motif file (matrix) |
pdf |
| 21 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-24 | -5.613e+01 | 0.0000 | 836.0 | 19.43% | 2783.1 | 13.74% | motif file (matrix) |
pdf |
| 22 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-23 | -5.508e+01 | 0.0000 | 977.0 | 22.71% | 3374.8 | 16.67% | motif file (matrix) |
pdf |
| 23 |  | E-box(bHLH)/Promoter/Homer | 1e-20 | -4.673e+01 | 0.0000 | 127.0 | 2.95% | 230.5 | 1.14% | motif file (matrix) |
pdf |
| 24 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-20 | -4.643e+01 | 0.0000 | 793.0 | 18.43% | 2706.1 | 13.36% | motif file (matrix) |
pdf |
| 25 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-20 | -4.625e+01 | 0.0000 | 140.0 | 3.25% | 269.7 | 1.33% | motif file (matrix) |
pdf |
| 26 |  | TOD6?/SacCer-Promoters/Homer | 1e-17 | -3.930e+01 | 0.0000 | 339.0 | 7.88% | 981.1 | 4.84% | motif file (matrix) |
pdf |
| 27 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-16 | -3.770e+01 | 0.0000 | 573.0 | 13.32% | 1904.0 | 9.40% | motif file (matrix) |
pdf |
| 28 |  | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-15 | -3.609e+01 | 0.0000 | 410.0 | 9.53% | 1275.2 | 6.30% | motif file (matrix) |
pdf |
| 29 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-14 | -3.421e+01 | 0.0000 | 1418.0 | 32.95% | 5562.1 | 27.47% | motif file (matrix) |
pdf |
| 30 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-14 | -3.227e+01 | 0.0000 | 346.0 | 8.04% | 1061.3 | 5.24% | motif file (matrix) |
pdf |
| 31 |  | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-13 | -3.039e+01 | 0.0000 | 326.0 | 7.58% | 1000.8 | 4.94% | motif file (matrix) |
pdf |
| 32 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-12 | -2.983e+01 | 0.0000 | 163.0 | 3.79% | 409.6 | 2.02% | motif file (matrix) |
pdf |
| 33 |  | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-11 | -2.696e+01 | 0.0000 | 245.0 | 5.69% | 721.5 | 3.56% | motif file (matrix) |
pdf |
| 34 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-11 | -2.681e+01 | 0.0000 | 774.0 | 17.99% | 2870.7 | 14.18% | motif file (matrix) |
pdf |
| 35 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-11 | -2.669e+01 | 0.0000 | 167.0 | 3.88% | 440.3 | 2.17% | motif file (matrix) |
pdf |
| 36 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-11 | -2.592e+01 | 0.0000 | 1045.0 | 24.29% | 4056.2 | 20.03% | motif file (matrix) |
pdf |
| 37 |  | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-10 | -2.409e+01 | 0.0000 | 539.0 | 12.53% | 1919.6 | 9.48% | motif file (matrix) |
pdf |
| 38 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-9 | -2.184e+01 | 0.0000 | 316.0 | 7.34% | 1039.9 | 5.14% | motif file (matrix) |
pdf |
| 39 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-9 | -2.156e+01 | 0.0000 | 468.0 | 10.88% | 1658.7 | 8.19% | motif file (matrix) |
pdf |
| 40 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-8 | -2.034e+01 | 0.0000 | 280.0 | 6.51% | 912.1 | 4.50% | motif file (matrix) |
pdf |
| 41 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-8 | -1.937e+01 | 0.0000 | 1638.0 | 38.07% | 6855.2 | 33.85% | motif file (matrix) |
pdf |
| 42 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-8 | -1.911e+01 | 0.0000 | 127.0 | 2.95% | 344.1 | 1.70% | motif file (matrix) |
pdf |
| 43 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-7 | -1.684e+01 | 0.0000 | 109.0 | 2.53% | 294.7 | 1.46% | motif file (matrix) |
pdf |
| 44 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-7 | -1.680e+01 | 0.0000 | 491.0 | 11.41% | 1821.1 | 8.99% | motif file (matrix) |
pdf |
| 45 |  | SUT1?/SacCer-Promoters/Homer | 1e-6 | -1.523e+01 | 0.0000 | 2916.0 | 67.77% | 12981.0 | 64.10% | motif file (matrix) |
pdf |
| 46 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-6 | -1.515e+01 | 0.0000 | 719.0 | 16.71% | 2831.6 | 13.98% | motif file (matrix) |
pdf |
| 47 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-6 | -1.470e+01 | 0.0000 | 80.0 | 1.86% | 205.6 | 1.02% | motif file (matrix) |
pdf |
| 48 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-6 | -1.470e+01 | 0.0000 | 80.0 | 1.86% | 205.6 | 1.02% | motif file (matrix) |
pdf |
| 49 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-6 | -1.447e+01 | 0.0000 | 597.0 | 13.87% | 2314.6 | 11.43% | motif file (matrix) |
pdf |
| 50 |  | NRF(NRF)/Promoter/Homer | 1e-6 | -1.403e+01 | 0.0000 | 99.0 | 2.30% | 276.7 | 1.37% | motif file (matrix) |
pdf |
| 51 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.363e+01 | 0.0000 | 57.0 | 1.32% | 133.5 | 0.66% | motif file (matrix) |
pdf |
| 52 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-5 | -1.310e+01 | 0.0000 | 766.0 | 17.80% | 3081.6 | 15.22% | motif file (matrix) |
pdf |
| 53 |  | TATA-box/Drosophila-Promoters/Homer | 1e-5 | -1.254e+01 | 0.0000 | 225.0 | 5.23% | 777.6 | 3.84% | motif file (matrix) |
pdf |
| 54 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.187e+01 | 0.0001 | 46.0 | 1.07% | 105.3 | 0.52% | motif file (matrix) |
pdf |
| 55 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-5 | -1.159e+01 | 0.0001 | 188.0 | 4.37% | 639.6 | 3.16% | motif file (matrix) |
pdf |
| 56 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-4 | -1.107e+01 | 0.0001 | 119.0 | 2.77% | 373.8 | 1.85% | motif file (matrix) |
pdf |
| 57 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-4 | -1.089e+01 | 0.0001 | 295.0 | 6.86% | 1088.2 | 5.37% | motif file (matrix) |
pdf |
| 58 |  | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.064e+01 | 0.0002 | 215.0 | 5.00% | 760.2 | 3.75% | motif file (matrix) |
pdf |
| 59 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-4 | -1.058e+01 | 0.0002 | 131.0 | 3.04% | 424.6 | 2.10% | motif file (matrix) |
pdf |
| 60 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-4 | -9.778e+00 | 0.0004 | 512.0 | 11.90% | 2040.2 | 10.08% | motif file (matrix) |
pdf |
| 61 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-4 | -9.472e+00 | 0.0005 | 134.0 | 3.11% | 447.7 | 2.21% | motif file (matrix) |
pdf |
| 62 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-4 | -9.340e+00 | 0.0005 | 1390.0 | 32.30% | 6006.7 | 29.66% | motif file (matrix) |
pdf |
| 63 |  | SeqBias: TA-repeat | 1e-3 | -8.648e+00 | 0.0011 | 3789.0 | 88.05% | 17455.4 | 86.20% | motif file (matrix) |
pdf |
| 64 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -7.977e+00 | 0.0021 | 45.0 | 1.05% | 121.1 | 0.60% | motif file (matrix) |
pdf |
| 65 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -7.950e+00 | 0.0021 | 79.0 | 1.84% | 247.8 | 1.22% | motif file (matrix) |
pdf |
| 66 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-3 | -7.941e+00 | 0.0021 | 36.0 | 0.84% | 91.0 | 0.45% | motif file (matrix) |
pdf |
| 67 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-3 | -7.552e+00 | 0.0030 | 44.0 | 1.02% | 120.7 | 0.60% | motif file (matrix) |
pdf |
| 68 |  | CRE(bZIP)/Promoter/Homer | 1e-3 | -7.440e+00 | 0.0033 | 191.0 | 4.44% | 706.8 | 3.49% | motif file (matrix) |
pdf |
| 69 |  | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-3 | -7.291e+00 | 0.0038 | 209.0 | 4.86% | 784.0 | 3.87% | motif file (matrix) |
pdf |
| 70 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.040e+00 | 0.0048 | 42.0 | 0.98% | 116.3 | 0.57% | motif file (matrix) |
pdf |
| 71 |  | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-2 | -6.135e+00 | 0.0118 | 1655.0 | 38.46% | 7361.8 | 36.35% | motif file (matrix) |
pdf |
| 72 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.121e+00 | 0.0118 | 605.0 | 14.06% | 2549.6 | 12.59% | motif file (matrix) |
pdf |
| 73 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.950e+00 | 0.0138 | 274.0 | 6.37% | 1088.1 | 5.37% | motif file (matrix) |
pdf |
| 74 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -5.888e+00 | 0.0145 | 495.0 | 11.50% | 2065.0 | 10.20% | motif file (matrix) |
pdf |
| 75 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.883e+00 | 0.0145 | 105.0 | 2.44% | 372.9 | 1.84% | motif file (matrix) |
pdf |
| 76 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.610e+00 | 0.0186 | 82.0 | 1.91% | 282.4 | 1.39% | motif file (matrix) |
pdf |
| 77 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.498e+00 | 0.0206 | 268.0 | 6.23% | 1072.1 | 5.29% | motif file (matrix) |
pdf |
| 78 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.481e+00 | 0.0207 | 986.0 | 22.91% | 4302.9 | 21.25% | motif file (matrix) |
pdf |
| 79 |  | Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.443e+00 | 0.0212 | 137.0 | 3.18% | 511.1 | 2.52% | motif file (matrix) |
pdf |
| 80 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.026e+00 | 0.0318 | 812.0 | 18.87% | 3526.6 | 17.42% | motif file (matrix) |
pdf |
| 81 |  | Sp1(Zf)/Promoter/Homer | 1e-2 | -4.722e+00 | 0.0425 | 50.0 | 1.16% | 164.1 | 0.81% | motif file (matrix) |
pdf |
| 82 |  | Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-2 | -4.692e+00 | 0.0433 | 1091.0 | 25.35% | 4820.5 | 23.80% | motif file (matrix) |
pdf |
| 83 |  | PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-2 | -4.647e+00 | 0.0447 | 461.0 | 10.71% | 1951.1 | 9.64% | motif file (matrix) |
pdf |