| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-213 | -4.925e+02 | 0.0000 | 1447.0 | 33.97% | 3100.8 | 14.75% | motif file (matrix) |
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| 2 |  | REB1/SacCer-Promoters/Homer | 1e-181 | -4.183e+02 | 0.0000 | 941.0 | 22.09% | 1655.3 | 7.88% | motif file (matrix) |
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| 3 |  | RLR1?/SacCer-Promoters/Homer | 1e-74 | -1.720e+02 | 0.0000 | 2008.0 | 47.14% | 7045.4 | 33.52% | motif file (matrix) |
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| 4 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-53 | -1.221e+02 | 0.0000 | 561.0 | 13.17% | 1383.9 | 6.58% | motif file (matrix) |
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| 5 |  | SeqBias: CG-repeat | 1e-45 | -1.043e+02 | 0.0000 | 747.0 | 17.54% | 2172.4 | 10.34% | motif file (matrix) |
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| 6 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-41 | -9.530e+01 | 0.0000 | 1046.0 | 24.55% | 3450.3 | 16.41% | motif file (matrix) |
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| 7 |  | SFP1/SacCer-Promoters/Homer | 1e-40 | -9.342e+01 | 0.0000 | 627.0 | 14.72% | 1777.5 | 8.46% | motif file (matrix) |
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| 8 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-39 | -9.062e+01 | 0.0000 | 397.0 | 9.32% | 953.4 | 4.54% | motif file (matrix) |
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| 9 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-38 | -8.867e+01 | 0.0000 | 551.0 | 12.93% | 1518.8 | 7.23% | motif file (matrix) |
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| 10 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-36 | -8.482e+01 | 0.0000 | 404.0 | 9.48% | 1004.8 | 4.78% | motif file (matrix) |
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| 11 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-36 | -8.431e+01 | 0.0000 | 385.0 | 9.04% | 940.0 | 4.47% | motif file (matrix) |
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| 12 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-35 | -8.116e+01 | 0.0000 | 619.0 | 14.53% | 1825.0 | 8.68% | motif file (matrix) |
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| 13 |  | TATA-box/SacCer-Promoters/Homer | 1e-33 | -7.608e+01 | 0.0000 | 1992.0 | 46.76% | 7921.3 | 37.69% | motif file (matrix) |
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| 14 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-31 | -7.328e+01 | 0.0000 | 455.0 | 10.68% | 1249.0 | 5.94% | motif file (matrix) |
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| 15 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-26 | -6.102e+01 | 0.0000 | 555.0 | 13.03% | 1715.0 | 8.16% | motif file (matrix) |
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| 16 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-26 | -6.088e+01 | 0.0000 | 1296.0 | 30.42% | 4886.6 | 23.25% | motif file (matrix) |
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| 17 |  | E-box/Arabidopsis-Promoters/Homer | 1e-26 | -6.036e+01 | 0.0000 | 503.0 | 11.81% | 1515.7 | 7.21% | motif file (matrix) |
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| 18 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-24 | -5.608e+01 | 0.0000 | 1054.0 | 24.74% | 3865.3 | 18.39% | motif file (matrix) |
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| 19 |  | E-box(bHLH)/Promoter/Homer | 1e-23 | -5.495e+01 | 0.0000 | 123.0 | 2.89% | 207.1 | 0.99% | motif file (matrix) |
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| 20 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-21 | -5.050e+01 | 0.0000 | 822.0 | 19.30% | 2919.0 | 13.89% | motif file (matrix) |
pdf |
| 21 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-20 | -4.777e+01 | 0.0000 | 768.0 | 18.03% | 2716.8 | 12.93% | motif file (matrix) |
pdf |
| 22 |  | TOD6?/SacCer-Promoters/Homer | 1e-20 | -4.621e+01 | 0.0000 | 327.0 | 7.68% | 935.3 | 4.45% | motif file (matrix) |
pdf |
| 23 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-19 | -4.575e+01 | 0.0000 | 914.0 | 21.46% | 3372.3 | 16.04% | motif file (matrix) |
pdf |
| 24 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-19 | -4.521e+01 | 0.0000 | 398.0 | 9.34% | 1215.5 | 5.78% | motif file (matrix) |
pdf |
| 25 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-18 | -4.306e+01 | 0.0000 | 131.0 | 3.08% | 265.9 | 1.26% | motif file (matrix) |
pdf |
| 26 |  | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-18 | -4.231e+01 | 0.0000 | 384.0 | 9.01% | 1182.7 | 5.63% | motif file (matrix) |
pdf |
| 27 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-16 | -3.861e+01 | 0.0000 | 770.0 | 18.08% | 2830.7 | 13.47% | motif file (matrix) |
pdf |
| 28 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-13 | -3.168e+01 | 0.0000 | 1351.0 | 31.71% | 5566.9 | 26.48% | motif file (matrix) |
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| 29 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-12 | -2.983e+01 | 0.0000 | 522.0 | 12.25% | 1867.7 | 8.89% | motif file (matrix) |
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| 30 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-12 | -2.779e+01 | 0.0000 | 990.0 | 23.24% | 3969.6 | 18.89% | motif file (matrix) |
pdf |
| 31 |  | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-10 | -2.523e+01 | 0.0000 | 229.0 | 5.38% | 707.1 | 3.36% | motif file (matrix) |
pdf |
| 32 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-10 | -2.500e+01 | 0.0000 | 725.0 | 17.02% | 2819.6 | 13.41% | motif file (matrix) |
pdf |
| 33 |  | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-10 | -2.459e+01 | 0.0000 | 497.0 | 11.67% | 1825.0 | 8.68% | motif file (matrix) |
pdf |
| 34 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-10 | -2.333e+01 | 0.0000 | 316.0 | 7.42% | 1074.4 | 5.11% | motif file (matrix) |
pdf |
| 35 |  | SUT1?/SacCer-Promoters/Homer | 1e-10 | -2.318e+01 | 0.0000 | 2848.0 | 66.85% | 13061.5 | 62.14% | motif file (matrix) |
pdf |
| 36 |  | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-9 | -2.275e+01 | 0.0000 | 289.0 | 6.78% | 969.4 | 4.61% | motif file (matrix) |
pdf |
| 37 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-9 | -2.185e+01 | 0.0000 | 149.0 | 3.50% | 426.0 | 2.03% | motif file (matrix) |
pdf |
| 38 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-8 | -2.052e+01 | 0.0000 | 1560.0 | 36.62% | 6787.2 | 32.29% | motif file (matrix) |
pdf |
| 39 |  | SeqBias: TA-repeat | 1e-8 | -2.039e+01 | 0.0000 | 3774.0 | 88.59% | 17965.0 | 85.47% | motif file (matrix) |
pdf |
| 40 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-8 | -1.987e+01 | 0.0000 | 286.0 | 6.71% | 986.4 | 4.69% | motif file (matrix) |
pdf |
| 41 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-8 | -1.969e+01 | 0.0000 | 147.0 | 3.45% | 432.4 | 2.06% | motif file (matrix) |
pdf |
| 42 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-7 | -1.818e+01 | 0.0000 | 63.0 | 1.48% | 140.3 | 0.67% | motif file (matrix) |
pdf |
| 43 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-7 | -1.706e+01 | 0.0000 | 422.0 | 9.91% | 1602.9 | 7.63% | motif file (matrix) |
pdf |
| 44 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.645e+01 | 0.0000 | 258.0 | 6.06% | 907.5 | 4.32% | motif file (matrix) |
pdf |
| 45 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.533e+01 | 0.0000 | 1356.0 | 31.83% | 5947.4 | 28.29% | motif file (matrix) |
pdf |
| 46 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-6 | -1.489e+01 | 0.0000 | 454.0 | 10.66% | 1777.7 | 8.46% | motif file (matrix) |
pdf |
| 47 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-6 | -1.384e+01 | 0.0000 | 675.0 | 15.85% | 2795.3 | 13.30% | motif file (matrix) |
pdf |
| 48 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-5 | -1.311e+01 | 0.0000 | 75.0 | 1.76% | 206.4 | 0.98% | motif file (matrix) |
pdf |
| 49 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-5 | -1.311e+01 | 0.0000 | 75.0 | 1.76% | 206.4 | 0.98% | motif file (matrix) |
pdf |
| 50 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-5 | -1.294e+01 | 0.0000 | 116.0 | 2.72% | 363.5 | 1.73% | motif file (matrix) |
pdf |
| 51 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-5 | -1.266e+01 | 0.0000 | 121.0 | 2.84% | 385.5 | 1.83% | motif file (matrix) |
pdf |
| 52 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-5 | -1.254e+01 | 0.0000 | 737.0 | 17.30% | 3110.6 | 14.80% | motif file (matrix) |
pdf |
| 53 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-5 | -1.253e+01 | 0.0000 | 181.0 | 4.25% | 630.5 | 3.00% | motif file (matrix) |
pdf |
| 54 |  | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.221e+01 | 0.0000 | 209.0 | 4.91% | 751.1 | 3.57% | motif file (matrix) |
pdf |
| 55 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-5 | -1.218e+01 | 0.0000 | 128.0 | 3.00% | 417.1 | 1.98% | motif file (matrix) |
pdf |
| 56 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-5 | -1.196e+01 | 0.0000 | 122.0 | 2.86% | 395.3 | 1.88% | motif file (matrix) |
pdf |
| 57 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.173e+01 | 0.0001 | 807.0 | 18.94% | 3456.0 | 16.44% | motif file (matrix) |
pdf |
| 58 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.167e+01 | 0.0001 | 968.0 | 22.72% | 4211.6 | 20.04% | motif file (matrix) |
pdf |
| 59 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-4 | -1.071e+01 | 0.0001 | 92.0 | 2.16% | 287.3 | 1.37% | motif file (matrix) |
pdf |
| 60 |  | NRF(NRF)/Promoter/Homer | 1e-4 | -1.070e+01 | 0.0001 | 84.0 | 1.97% | 256.4 | 1.22% | motif file (matrix) |
pdf |
| 61 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-4 | -1.061e+01 | 0.0002 | 562.0 | 13.19% | 2349.7 | 11.18% | motif file (matrix) |
pdf |
| 62 |  | CRE(bZIP)/Promoter/Homer | 1e-4 | -1.040e+01 | 0.0002 | 181.0 | 4.25% | 655.9 | 3.12% | motif file (matrix) |
pdf |
| 63 |  | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-3 | -8.974e+00 | 0.0008 | 1597.0 | 37.49% | 7313.7 | 34.79% | motif file (matrix) |
pdf |
| 64 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-3 | -8.480e+00 | 0.0013 | 269.0 | 6.31% | 1067.7 | 5.08% | motif file (matrix) |
pdf |
| 65 |  | ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -7.962e+00 | 0.0021 | 53.0 | 1.24% | 157.7 | 0.75% | motif file (matrix) |
pdf |
| 66 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.842e+00 | 0.0023 | 44.0 | 1.03% | 124.5 | 0.59% | motif file (matrix) |
pdf |
| 67 |  | ETS(ETS)/Promoter/Homer | 1e-3 | -7.758e+00 | 0.0025 | 330.0 | 7.75% | 1355.6 | 6.45% | motif file (matrix) |
pdf |
| 68 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-3 | -7.313e+00 | 0.0038 | 384.0 | 9.01% | 1611.7 | 7.67% | motif file (matrix) |
pdf |
| 69 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -7.223e+00 | 0.0041 | 40.0 | 0.94% | 113.6 | 0.54% | motif file (matrix) |
pdf |
| 70 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -7.190e+00 | 0.0042 | 77.0 | 1.81% | 259.0 | 1.23% | motif file (matrix) |
pdf |
| 71 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -6.750e+00 | 0.0064 | 83.0 | 1.95% | 287.6 | 1.37% | motif file (matrix) |
pdf |
| 72 |  | TATA-box/Drosophila-Promoters/Homer | 1e-2 | -6.513e+00 | 0.0080 | 209.0 | 4.91% | 836.1 | 3.98% | motif file (matrix) |
pdf |
| 73 |  | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.379e+00 | 0.0090 | 538.0 | 12.63% | 2350.8 | 11.18% | motif file (matrix) |
pdf |
| 74 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-2 | -6.352e+00 | 0.0091 | 463.0 | 10.87% | 2001.4 | 9.52% | motif file (matrix) |
pdf |
| 75 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.044e+00 | 0.0122 | 122.0 | 2.86% | 461.7 | 2.20% | motif file (matrix) |
pdf |
| 76 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.008e+00 | 0.0125 | 168.0 | 3.94% | 663.4 | 3.16% | motif file (matrix) |
pdf |
| 77 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.953e+00 | 0.0131 | 175.0 | 4.11% | 695.9 | 3.31% | motif file (matrix) |
pdf |
| 78 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-2 | -5.612e+00 | 0.0181 | 40.0 | 0.94% | 124.7 | 0.59% | motif file (matrix) |
pdf |
| 79 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.587e+00 | 0.0183 | 1240.0 | 29.11% | 5730.0 | 27.26% | motif file (matrix) |
pdf |
| 80 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.533e+00 | 0.0191 | 577.0 | 13.54% | 2561.9 | 12.19% | motif file (matrix) |
pdf |
| 81 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -5.477e+00 | 0.0200 | 480.0 | 11.27% | 2107.9 | 10.03% | motif file (matrix) |
pdf |
| 82 |  | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-2 | -5.448e+00 | 0.0203 | 197.0 | 4.62% | 803.8 | 3.82% | motif file (matrix) |
pdf |
| 83 |  | p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-2 | -5.325e+00 | 0.0227 | 190.0 | 4.46% | 774.6 | 3.68% | motif file (matrix) |
pdf |
| 84 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.039e+00 | 0.0299 | 96.0 | 2.25% | 363.9 | 1.73% | motif file (matrix) |
pdf |
| 85 |  | PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-2 | -4.994e+00 | 0.0309 | 29.0 | 0.68% | 86.8 | 0.41% | motif file (matrix) |
pdf |
| 86 |  | ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -4.752e+00 | 0.0388 | 119.0 | 2.79% | 469.0 | 2.23% | motif file (matrix) |
pdf |