Information for 2-AAAAAAAGAKTN (Motif 2)


Reverse Opposite:

p-value:1e-16
log p-value:-3.759e+01
Information Content per bp:1.770
Number of Target Sequences with motif155.0
Percentage of Target Sequences with motif25.45%
Number of Background Sequences with motif5881.0
Percentage of Background Sequences with motif12.87%
Average Position of motif in Targets91.4 +/- 56.3bp
Average Position of motif in Background98.6 +/- 73.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hb/dmmpmm(Noyes)/fly

Match Rank:1
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---AAAAAAAGAKTN
ACNAAAAAAACA---

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:AAAAAAAGAKTN
AAAAAA------

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.83
Offset:-6
Orientation:forward strand
Alignment:------AAAAAAAGAKTN
TACTGGAAAAAAAA----

hb/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--AAAAAAAGAKTN
ATAAAAAA------

PB0182.1_Srf_2/Jaspar

Match Rank:5
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAAAGAKTN
GTTAAAAAAAAAAATTA

SeqBias: polyA-repeat

Match Rank:6
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AAAAAAAGAKTN
AAAAAAAAAA---

hb/dmmpmm(Down)/fly

Match Rank:7
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---AAAAAAAGAKTN
CATAAAAAA------

hb/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---AAAAAAAGAKTN
CATAAAAAA------

hb/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAAAGAKTN
CAAAAAAA-----

hb/MA0049.1/Jaspar

Match Rank:10
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---AAAAAAAGAKTN
GCATAAAAAA-----