Information for 5-CCCCTTAA (Motif 18)


Reverse Opposite:

p-value:1e-8
log p-value:-1.930e+01
Information Content per bp:1.598
Number of Target Sequences with motif194.0
Percentage of Target Sequences with motif31.86%
Number of Background Sequences with motif9913.3
Percentage of Background Sequences with motif21.70%
Average Position of motif in Targets101.6 +/- 55.1bp
Average Position of motif in Background100.2 +/- 71.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPH1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCCCTTAA--
CCCCTTAAGG

RPH1(MacIsaac)/Yeast

Match Rank:2
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CCCCTTAA--
CCCCTTAAGG

MSN4(MacIsaac)/Yeast

Match Rank:3
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTAA
CCCCCTT--

GIS1/MA0306.1/Jaspar

Match Rank:4
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-CCCCTTAA
ACCCCTAAA

RPH1/MA0372.1/Jaspar

Match Rank:5
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-CCCCTTAA
ACCCCTAA-

MSN4/Literature(Harbison)/Yeast

Match Rank:6
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTAA
NCCCCTG--

MSN2(MacIsaac)/Yeast

Match Rank:7
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CCCCTTAA
GCCCCTT--

MSN4/MA0342.1/Jaspar

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCCCTTAA
CCCCT---

RGM1/MA0366.1/Jaspar

Match Rank:9
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCCCTTAA
CCCCT---

MSN2/MA0341.1/Jaspar

Match Rank:10
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CCCCTTAA
CCCCT---