Information for 9-GATGCATAAT (Motif 11)


Reverse Opposite:

p-value:1e-10
log p-value:-2.363e+01
Information Content per bp:1.650
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif13.14%
Number of Background Sequences with motif2729.9
Percentage of Background Sequences with motif5.98%
Average Position of motif in Targets101.4 +/- 57.3bp
Average Position of motif in Background99.9 +/- 65.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

unc-86/MA0926.1/Jaspar

Match Rank:1
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:GATGCATAAT
-ATGCATAT-

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----GATGCATAAT---
AAAATATGCATAATAAA

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GATGCATAAT---
-ATGCATAATTCA

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GATGCATAAT-
-ATGAATATTC

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GATGCATAAT-
-ATGMATATDC

vvl/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GATGCATAAT
--TGCATA--

vvl/MA0254.1/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GATGCATAAT
--TGCATA--

vvl/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GATGCATAAT
--TGCATAA-

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GATGCATAAT------
-ATGAATWATTCATGA

POU4F1/MA0790.1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GATGCATAAT-----
-ATGAATAATTAATG