Information for 3-CGCGCGRC (Motif 5)


Reverse Opposite:

p-value:1e-20
log p-value:-4.713e+01
Information Content per bp:1.577
Number of Target Sequences with motif857.0
Percentage of Target Sequences with motif53.16%
Number of Background Sequences with motif18537.7
Percentage of Background Sequences with motif41.53%
Average Position of motif in Targets100.8 +/- 52.9bp
Average Position of motif in Background100.1 +/- 81.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.53
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RSC3/MA0374.1/Jaspar

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CGCGCGRC
CGCGCGG-

RSC30/MA0375.1/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CGCGCGRC
CGCGCGCG--

Tcfl5/MA0632.1/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--CGCGCGRC
GGCACGTGCC

MBP1/MA0329.1/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCGRC
NNCGCGT---

Hes1/MA1099.1/Jaspar

Match Rank:5
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCGRC
NNCGCGTGNN

SUT1/MA0399.1/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CGCGCGRC
CGCGGGG-

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:7
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CGCGCGRC
TAGCGCGC---

SUT1(MacIsaac)/Yeast

Match Rank:8
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CGCGCGRC
CGCGGGG-

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CGCGCGRC
TGCGTG--

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:10
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCGRC
NAVGCGCGTGDD