Information for 6-MGRATTCGAACC (Motif 4)


Reverse Opposite:

p-value:1e-22
log p-value:-5.188e+01
Information Content per bp:1.785
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif3.54%
Number of Background Sequences with motif300.8
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets107.4 +/- 47.7bp
Average Position of motif in Background97.4 +/- 74.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OPI1(MacIsaac)/Yeast

Match Rank:1
Score:0.81
Offset:6
Orientation:forward strand
Alignment:MGRATTCGAACC-
------CGAACCG

OPI1/MA0349.1/Jaspar

Match Rank:2
Score:0.81
Offset:6
Orientation:forward strand
Alignment:MGRATTCGAACC-
------CGAACCG

OPI1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.80
Offset:5
Orientation:forward strand
Alignment:MGRATTCGAACC
-----TCGAACC

YER051W(MacIsaac)/Yeast

Match Rank:4
Score:0.68
Offset:4
Orientation:forward strand
Alignment:MGRATTCGAACC
----TTCGAA--

ct/MA0218.1/Jaspar

Match Rank:5
Score:0.66
Offset:5
Orientation:forward strand
Alignment:MGRATTCGAACC
-----TTGAAC-

lin-14/MA0261.1/Jaspar

Match Rank:6
Score:0.63
Offset:7
Orientation:forward strand
Alignment:MGRATTCGAACC-
-------GAACAC

MA0261.1_lin-14/Jaspar

Match Rank:7
Score:0.63
Offset:7
Orientation:forward strand
Alignment:MGRATTCGAACC-
-------GAACAC

Ct/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:MGRATTCGAACC-
---GCTTGAACAA

SNF1(MacIsaac)/Yeast

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--MGRATTCGAACC---
CCGGGGATCGAACCCGG

Unknown3/Arabidopsis-Promoters/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:forward strand
Alignment:MGRATTCGAACC--
----AYTAAACCGG