Information for 2-TTTTTTTTTT (Motif 3)


Reverse Opposite:

p-value:1e-36
log p-value:-8.519e+01
Information Content per bp:1.875
Number of Target Sequences with motif420.0
Percentage of Target Sequences with motif26.05%
Number of Background Sequences with motif6218.6
Percentage of Background Sequences with motif13.93%
Average Position of motif in Targets98.4 +/- 56.0bp
Average Position of motif in Background100.0 +/- 75.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: polyA-repeat

Match Rank:1
Score:1.00
Offset:0
Orientation:reverse strand
Alignment:TTTTTTTTTT
TTTTTTTTTT

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTTTTTT----
NNNNTTTTTTTTTNAAC

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTTTTTT----
GNATTTTTTTTTTGANC

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:TTTTTTTTTT-----
-TTTTTTTTCNNGTN

hb/dmmpmm(Noyes)/fly

Match Rank:5
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:TTTTTTTTTT--
TGTTTTTTTNGT

RLR1?/SacCer-Promoters/Homer

Match Rank:6
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--TTTTTTTTTT
WTTTTCYYTTTT

hb/MA0049.1/Jaspar

Match Rank:7
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:TTTTTTTTTT-
-TTTTTTATGC

hb/dmmpmm(Down)/fly

Match Rank:8
Score:0.79
Offset:1
Orientation:forward strand
Alignment:TTTTTTTTTT
-TTTTTTATG

hb/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.78
Offset:3
Orientation:forward strand
Alignment:TTTTTTTTTT
---TTTTTT-

PB0093.1_Zfp105_1/Jaspar

Match Rank:10
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTTTTTT---
NTNTTGTTGTTTGTN