Information for 17-YTTTGCCACC (Motif 24)


Reverse Opposite:

p-value:1e-9
log p-value:-2.246e+01
Information Content per bp:1.851
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif3.66%
Number of Background Sequences with motif637.6
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets105.4 +/- 54.6bp
Average Position of motif in Background104.9 +/- 69.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:1
Score:0.98
Offset:1
Orientation:forward strand
Alignment:YTTTGCCACC
-TTTGCCACC

RPN4(MacIsaac)/Yeast

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:YTTTGCCACC-
TTTTGCCACCG

RPN4/MA0373.1/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:YTTTGCCACC
---CGCCACC

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:YTTTGCCACC-
--ATGCCAACC

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-YTTTGCCACC-----
ACTATGCCAACCTACC

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YTTTGCCACC
-CTTGGCAA-

slbo/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:YTTTGCCACC-
-TTTGCAATCA

Six4/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:YTTTGCCACC
ATTTGATACC

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:YTTTGCCACC
NNTTGGCANN

TBX2/MA0688.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:YTTTGCCACC--
-TTTCACACCTN