Information for 8-CGNACCTC (Motif 19)


Reverse Opposite:

p-value:1e-10
log p-value:-2.443e+01
Information Content per bp:1.407
Number of Target Sequences with motif200.0
Percentage of Target Sequences with motif12.41%
Number of Background Sequences with motif3425.7
Percentage of Background Sequences with motif7.67%
Average Position of motif in Targets97.4 +/- 57.9bp
Average Position of motif in Background100.7 +/- 76.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OPI1(MacIsaac)/Yeast

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CGNACCTC
CGAACCG-

OPI1/MA0349.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGNACCTC
CGAACCG-

OPI1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGNACCTC
TCGAACC--

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CGNACCTC
NNACTTACCTN

ARR14/MA0947.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGNACCTC
GCGTATCT-

TCP4/MA1035.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGNACCTC
GGGACCAC

Run/dmmpmm(Papatsenko)/fly

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGNACCTC-
--CACCGCC

PCF5(TCP)/Oryza sativa/AthaMap

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CGNACCTC
NNGGGACCAC

PB0094.1_Zfp128_1/Jaspar

Match Rank:9
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------CGNACCTC--
TCTTTGGCGTACCCTAA

ARALYDRAFT_897773/MA1054.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGNACCTC
TGGGGACCAC