Information for 16-GAGAAGATCATC (Motif 17)


Reverse Opposite:

p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.833
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif25.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets101.4 +/- 54.6bp
Average Position of motif in Background100.4 +/- 54.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ARR10(GARP)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GAGAAGATCATC
GCGAAGATCCGC

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAGAAGATCATC
---CAGATCA--

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGATCATC---
AAGGCGAAATCATCGCA

Mecom/MA0029.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGATCATC
AAGATAAGATAACA

YPR013C/MA0434.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGAAGATCATC
-TGTAGATCA--

ECM23/MA0293.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAGAAGATCATC-
--AAAGATCTAAA

JUND(var.2)/MA0492.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGAAGATCATC---
NATGACATCATCNNN

BATF3/MA0835.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAGAAGATCATC-
TGATGACGTCATCA

JUN/MA0488.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGAAGATCATC--
-ATGACATCATCNN

TOD6/MA0350.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGATCATC-------
AGGCACAGCTCATCGCGTTTT