Live
Found logdir. Deleting previous model
Estimating enzyme shift in input file
Current estimated shift: +0/+0
awk -v OFS="\t" '{if ($6=="+"){print $1,$2+4,$3,$4,$5,$6} else if ($6=="-") {print $1,$2,$3-4,$4,$5,$6}}' | sort -k1,1 | bedtools genomecov -bg -5 -i stdin -g /oak/stanford/groups/akundaje/soumyak/refs/hg38/GRCh38_EBV.chrom.sizes.tsv | LC_COLLATE="C" sort -k1,1 -k2,2n 
Making BedGraph (Filter chromosomes not in reference fasta)
Making Bigwig
non zero bigwig entries in the given chromosome:  10172909
evaluating hyperparameters on the following chromosomes ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr8', 'chr9', 'chr11', 'chr12', 'chr14', 'chr15', 'chr16', 'chr20', 'chr22', 'chrY', 'chr10', 'chr18']