{
    "general": {
        "date": "2024-06-10 02:05:17",
        "title": "trevino_2021.c9",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.7202729800864567,
                "fri_blacklist": 0.002285791574698173,
                "fri_prom": 0.3515440050650105,
                "fri_enh": 0.4215742365262595
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 179393,
                "Np": 0,
                "N_opt": 179393,
                "N_consv": 179393,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 103849,
                "Np": 0,
                "N_opt": 103849,
                "N_consv": 103849,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 221673
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 258.0,
                "50_pct": 473.0,
                "75_pct": 788.0,
                "max_size": 2448.0,
                "mean": 564.501630780474
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 566.0,
                "50_pct": 779.0,
                "75_pct": 1031.0,
                "max_size": 2448.0,
                "mean": 819.3538599312463
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 357.0,
                "50_pct": 580.0,
                "75_pct": 865.0,
                "max_size": 2448.0,
                "mean": 648.8414096425167
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.7247013247153248
                },
                "rep1-pr1": {
                    "frip": 0.7168085044212652
                },
                "rep1-pr2": {
                    "frip": 0.7219193360720861
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6978015146381559
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6038874271748477
                }
            }
        }
    }
}
