{
    "general": {
        "date": "2024-06-10 02:21:30",
        "title": "trevino_2021.c4",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.6629939319804788,
                "fri_blacklist": 0.0019110363081540026,
                "fri_prom": 0.4320244497060341,
                "fri_enh": 0.279000948208635
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 162656,
                "Np": 0,
                "N_opt": 162656,
                "N_consv": 162656,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 118983,
                "Np": 0,
                "N_opt": 118983,
                "N_consv": 118983,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 185894
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 423.0,
                "50_pct": 775.0,
                "75_pct": 1129.0,
                "max_size": 3412.0,
                "mean": 825.1873271864611
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 734.0,
                "50_pct": 994.0,
                "75_pct": 1296.0,
                "max_size": 3412.0,
                "mean": 1045.6138271853963
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 553.0,
                "50_pct": 858.0,
                "75_pct": 1186.0,
                "max_size": 3412.0,
                "mean": 908.8497319496361
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.6794202320813065
                },
                "rep1-pr1": {
                    "frip": 0.6665932112144973
                },
                "rep1-pr2": {
                    "frip": 0.6723714666107237
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6675981326160259
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6282297645587797
                }
            }
        }
    }
}
