{
    "general": {
        "date": "2024-06-10 01:59:03",
        "title": "trevino_2021.c18",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.6230858963914778,
                "fri_blacklist": 0.0019313017900901557,
                "fri_prom": 0.31621267176417933,
                "fri_enh": 0.3573572020748043
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 162337,
                "Np": 0,
                "N_opt": 162337,
                "N_consv": 162337,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 77088,
                "Np": 0,
                "N_opt": 77088,
                "N_consv": 77088,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 203493
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 253.0,
                "50_pct": 477.0,
                "75_pct": 824.0,
                "max_size": 2696.0,
                "mean": 583.7621392382048
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 632.0,
                "50_pct": 867.0,
                "75_pct": 1138.0,
                "max_size": 2696.0,
                "mean": 906.444401203819
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 357.0,
                "50_pct": 597.0,
                "75_pct": 915.0,
                "max_size": 2696.0,
                "mean": 674.3643901267117
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.5621797881864758
                },
                "rep1-pr1": {
                    "frip": 0.5857785620685728
                },
                "rep1-pr2": {
                    "frip": 0.6028517501500218
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.5284909886764947
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3996673469139295
                }
            }
        }
    }
}
