{
    "general": {
        "date": "2024-06-10 02:07:11",
        "title": "trevino_2021.c13",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.7165531171867368,
                "fri_blacklist": 0.001571186682486061,
                "fri_prom": 0.37160039041203125,
                "fri_enh": 0.366756845651475
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 181357,
                "Np": 0,
                "N_opt": 181357,
                "N_consv": 181357,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 117619,
                "Np": 0,
                "N_opt": 117619,
                "N_consv": 117619,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 224279
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 277.0,
                "50_pct": 542.0,
                "75_pct": 888.0,
                "max_size": 3165.0,
                "mean": 632.2634843208682
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 607.0,
                "50_pct": 838.0,
                "75_pct": 1110.0,
                "max_size": 3147.0,
                "mean": 885.8082282624406
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 414.0,
                "50_pct": 663.0,
                "75_pct": 970.0,
                "max_size": 3165.0,
                "mean": 730.9871744680382
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.7168899507179668
                },
                "rep1-pr1": {
                    "frip": 0.7049157833897604
                },
                "rep1-pr2": {
                    "frip": 0.6997601469370116
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6955266685774651
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6283117097730755
                }
            }
        }
    }
}