{
    "general": {
        "date": "2024-06-10 01:51:58",
        "title": "trevino_2021.c12",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.6572086593599051,
                "fri_blacklist": 0.002045927646546273,
                "fri_prom": 0.41401216664892126,
                "fri_enh": 0.29785433592705984
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 138557,
                "Np": 0,
                "N_opt": 138557,
                "N_consv": 138557,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 73781,
                "Np": 0,
                "N_opt": 73781,
                "N_consv": 73781,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 193907
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 244.0,
                "50_pct": 490.0,
                "75_pct": 880.0,
                "max_size": 2908.0,
                "mean": 610.2177538717013
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 704.0,
                "50_pct": 948.0,
                "75_pct": 1221.0,
                "max_size": 2824.0,
                "mean": 984.5056179775281
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 435.0,
                "50_pct": 700.0,
                "75_pct": 1023.0,
                "max_size": 2908.0,
                "mean": 765.762364947278
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.6503066922272948
                },
                "rep1-pr1": {
                    "frip": 0.6618713780358225
                },
                "rep1-pr2": {
                    "frip": 0.6556533333478194
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6157093970617953
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.5125570931286165
                }
            }
        }
    }
}
