{
    "general": {
        "date": "2024-06-10 02:36:43",
        "title": "trevino_2021.c11",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.6347790969837143,
                "fri_blacklist": 0.001966473753914874,
                "fri_prom": 0.33809504840393495,
                "fri_enh": 0.36132718822532145
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 211296,
                "Np": 0,
                "N_opt": 211296,
                "N_consv": 211296,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 142359,
                "Np": 0,
                "N_opt": 142359,
                "N_consv": 142359,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 253221
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 328.0,
                "50_pct": 629.0,
                "75_pct": 989.0,
                "max_size": 3019.0,
                "mean": 707.2514048992778
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 653.0,
                "50_pct": 905.0,
                "75_pct": 1206.0,
                "max_size": 3019.0,
                "mean": 954.5053983239557
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 465.0,
                "50_pct": 735.0,
                "75_pct": 1066.0,
                "max_size": 3019.0,
                "mean": 802.5529068226564
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.6203266696013007
                },
                "rep1-pr1": {
                    "frip": 0.6048782715959949
                },
                "rep1-pr2": {
                    "frip": 0.6144519308119628
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6010248666416239
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.5449532449710558
                }
            }
        }
    }
}