{
    "general": {
        "date": "2024-06-10 02:44:44",
        "title": "trevino_2021.c1",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
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                "fri_dhs": 0.7044716552403294,
                "fri_blacklist": 0.001731120543265302,
                "fri_prom": 0.3484108821585634,
                "fri_enh": 0.39001401760499915
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 213161,
                "Np": 0,
                "N_opt": 213161,
                "N_consv": 213161,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 144563,
                "Np": 0,
                "N_opt": 144563,
                "N_consv": 144563,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 256943
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
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                "min_size": 150.0,
                "25_pct": 285.0,
                "50_pct": 564.0,
                "75_pct": 911.0,
                "max_size": 3005.0,
                "mean": 650.7623597451575
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            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 604.0,
                "50_pct": 839.0,
                "75_pct": 1118.0,
                "max_size": 3005.0,
                "mean": 889.3083084883407
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            "overlap_opt": {
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                "25_pct": 413.0,
                "50_pct": 671.0,
                "75_pct": 987.0,
                "max_size": 3005.0,
                "mean": 740.7553867733778
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        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
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                "rep1": {
                    "frip": 0.7143753834742433
                },
                "rep1-pr1": {
                    "frip": 0.7036771915479059
                },
                "rep1-pr2": {
                    "frip": 0.7070788616675121
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6967358568523655
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            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.6410285740867188
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            }
        }
    }
}