{
    "general": {
        "date": "2024-10-25 11:48:08",
        "title": "roussos_2024.infant.Oligo",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.25225996445743215,
                "fri_blacklist": 0.019065147163844297,
                "fri_prom": 0.11062590928702004,
                "fri_enh": 0.23812893617052577
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 145707,
                "Np": 0,
                "N_opt": 145707,
                "N_consv": 145707,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 66395,
                "Np": 0,
                "N_opt": 66395,
                "N_consv": 66395,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 296434
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 183.0,
                "50_pct": 300.0,
                "75_pct": 639.0,
                "max_size": 3347.0,
                "mean": 479.7449617790132
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 771.0,
                "50_pct": 1055.0,
                "75_pct": 1321.0,
                "max_size": 3347.0,
                "mean": 1065.5429023269824
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 388.0,
                "50_pct": 645.0,
                "75_pct": 1049.0,
                "max_size": 3347.0,
                "mean": 749.6666529404902
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.2033153490511348
                },
                "rep1-pr1": {
                    "frip": 0.20374304280254732
                },
                "rep1-pr2": {
                    "frip": 0.2036582699149977
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.15983565317557133
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.11876953263733216
                }
            }
        }
    }
}
