{
    "general": {
        "date": "2024-10-25 10:39:38",
        "title": "roussos_2024.infant.Microglia",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.3628771105275832,
                "fri_blacklist": 0.017823302519125655,
                "fri_prom": 0.18998273544037855,
                "fri_enh": 0.24044732349120426
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 136543,
                "Np": 0,
                "N_opt": 136543,
                "N_consv": 136543,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 69025,
                "Np": 0,
                "N_opt": 69025,
                "N_consv": 69025,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 296982
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 152.0,
                "50_pct": 239.0,
                "75_pct": 544.0,
                "max_size": 3347.0,
                "mean": 422.25290421641716
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 687.0,
                "50_pct": 943.0,
                "75_pct": 1207.0,
                "max_size": 3347.0,
                "mean": 969.0719449474828
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 319.0,
                "50_pct": 593.0,
                "75_pct": 970.0,
                "max_size": 3347.0,
                "mean": 684.0301663212322
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.33249419668762836
                },
                "rep1-pr1": {
                    "frip": 0.3368396522046475
                },
                "rep1-pr2": {
                    "frip": 0.3358361982449575
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.27462101004265976
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.22663181215795905
                }
            }
        }
    }
}
