{
    "general": {
        "date": "2024-10-25 12:27:26",
        "title": "roussos_2024.infant.GABA",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.23227693688408327,
                "fri_blacklist": 0.012325362830675604,
                "fri_prom": 0.09366904869083861,
                "fri_enh": 0.2378921425489259
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 146653,
                "Np": 0,
                "N_opt": 146653,
                "N_consv": 146653,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 63077,
                "Np": 0,
                "N_opt": 63077,
                "N_consv": 63077,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298062
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 196.0,
                "50_pct": 325.0,
                "75_pct": 664.0,
                "max_size": 3381.0,
                "mean": 503.35509726164355
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 839.0,
                "50_pct": 1120.0,
                "75_pct": 1393.0,
                "max_size": 3381.0,
                "mean": 1132.366330041061
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 403.0,
                "50_pct": 666.0,
                "75_pct": 1084.0,
                "max_size": 3381.0,
                "mean": 776.7787839321392
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.1678594601006846
                },
                "rep1-pr1": {
                    "frip": 0.16641866961858304
                },
                "rep1-pr2": {
                    "frip": 0.16653743543274385
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1268053092633132
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.08965757118705164
                }
            }
        }
    }
}
